View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0700_low_13 (Length: 283)
Name: NF0700_low_13
Description: NF0700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0700_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 37207809 - 37207543
Alignment:
| Q |
11 |
cagagagcacaatggacatcatgccatggcatacgtggatatttttggcgatcaaattcatctctcatggtgtcttcccatgagtttggttcagactctc |
110 |
Q |
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| T |
37207809 |
cagagagcacaatggacatcatgccatggcatacgtggatatttttggcgatcaaattcatctctcatggtgtcttcccatgagtttggttcagactctc |
37207710 |
T |
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| Q |
111 |
tatacacgaataaaaattccacaaatcaagtctccaaaaacatgaaggaaaaaaggtgcaccaagccaccaatctatggatttcattcctattcctatgg |
210 |
Q |
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| T |
37207709 |
tatacacgaataaaaattccacaaatcaagtctccaaaaacatgaaggaaaaaaggtgcaccaagccaccatcctatggatttcattcctattcctatgg |
37207610 |
T |
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| Q |
211 |
atttcattcactcataagcaacgatgatgacttttcattcctattcctatggatttcattcactcat |
277 |
Q |
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| T |
37207609 |
atttcattcactcataagcaacgatgatgacttttcattcctattcctatggatttcattcactcat |
37207543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 37207629 - 37207589
Alignment:
| Q |
243 |
tttcattcctattcctatggatttcattcactcataagcaa |
283 |
Q |
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| T |
37207629 |
tttcattcctattcctatggatttcattcactcataagcaa |
37207589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 13749541 - 13749629
Alignment:
| Q |
17 |
gcacaatggacatcatgccatggcatacgtggatatttttggcgatcaaattcatctctcatggtgtcttcccatgagtttggttcaga |
105 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||| || || ||||||||| |||| || ||||||||||| ||||||||||| |
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| T |
13749541 |
gcacaatgaacatcatgccaaggcatacgaggatatttttcacgttccaattcatctttcattgtatcttcccatgaatttggttcaga |
13749629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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