View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0700_low_2 (Length: 618)
Name: NF0700_low_2
Description: NF0700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0700_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 66 - 473
Target Start/End: Complemental strand, 4211778 - 4211371
Alignment:
| Q |
66 |
acatcatcatcaccaacattctgggctggtctctacagctggtttactcccaccatcttcttcctcctccttcaacttgtcatagctaccatttacatca |
165 |
Q |
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| T |
4211778 |
acatcatcatcaccaacattctgggctggtctctacagctggtttactcccaccatcttcttcctcctccttcaacttgtcatagctaccatttacatca |
4211679 |
T |
|
| Q |
166 |
cttccactcttgccaatgccacccaaaaacatctccaacaacaagatcctaactttcaacaaccccatcaccaacaactctttagatctccttctgtttt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4211678 |
cttccactcttgccaatgccacccaaaaacatctccaacaacaagatcctaactttcaacaaccccatcaccaacaactctttagatctccttctgtttt |
4211579 |
T |
|
| Q |
266 |
acaaagactcaaatccatcaacttttactcttaccaaccttatagatcccaacaagaacaacctcaacaatatcaacaacttcaaacgtacgaaaatgaa |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4211578 |
acaaagactcaaatccatcaacttttactcttaccaaccttatagatcccaacaagaacaacctcaacaatatcaacaacttcaaacgtacgaaaatgaa |
4211479 |
T |
|
| Q |
366 |
atccatgttcctcaacttgctagatctccttctgttttacaaatactcaaatccattaacctttatagattcttacctacactccccttcactactattc |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| | | |
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| T |
4211478 |
atccatgttcctcaacttgctagatctccttctgttttacaaagactcaaatccattaacctttatagttacttacctacacaacccttcactacaaagc |
4211379 |
T |
|
| Q |
466 |
tctcaccc |
473 |
Q |
| |
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|||||||| |
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| T |
4211378 |
tctcaccc |
4211371 |
T |
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