View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0700_low_3 (Length: 503)
Name: NF0700_low_3
Description: NF0700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0700_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 6275732 - 6276152
Alignment:
| Q |
1 |
agcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275732 |
agcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt |
6275831 |
T |
|
| Q |
101 |
gttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275832 |
gttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaa |
6275931 |
T |
|
| Q |
201 |
atgtaagatatttaagatgtaagataaatatgata-tttttgataattaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||||| |
|
|
| T |
6275932 |
atgtaagatatttaagatgtaagataaatttgatattttttgataattaccttgttggcaaagaaaatgcgttcagttttgtactttcgacaattgtaaa |
6276031 |
T |
|
| Q |
300 |
cccatgagttgcaaacaaagttgatggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||| || || || ||||| ||||||| | ||| ||| |||||||||| |
|
|
| T |
6276032 |
tccatgagttgcaaacaaagttgatggttccatggttaggaatatcttcaagtgttaaacttacaagaaagaatt---ctcctagcatgaaattctcaat |
6276128 |
T |
|
| Q |
400 |
ataaaaagctcctggagttcccat |
423 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
6276129 |
ataaaatgctcctggaattcccat |
6276152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 246 - 431
Target Start/End: Original strand, 6364716 - 6364901
Alignment:
| Q |
246 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364716 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
6364815 |
T |
|
| Q |
346 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgt |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364816 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgt |
6364901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 6333160 - 6333577
Alignment:
| Q |
1 |
agcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
6333160 |
agctttctttcttgtcaggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagt |
6333259 |
T |
|
| Q |
101 |
gttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaa |
200 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||||||||| |||||||| || ||||||||||||| |||| ||| ||||||||||||| || |
|
|
| T |
6333260 |
cttcaattcttcttgtctgtagtagactaatggagctggtgtttcgcttggaaggtacgtctatatttata-tttatttatcggtgtcaaattttgagaa |
6333358 |
T |
|
| Q |
201 |
atgtaagatat-ttaagatgtaagataaatatgatatttttgataattaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaa |
299 |
Q |
| |
|
|| ||| | | ||| |||| | | ||||||||| ||||| | ||||||||||| | |||||| |||||||| ||||| || |||||||| ||||||| |
|
|
| T |
6333359 |
atataatttgtattagcatgttaaagaaatatgattttttt--tcattaccttgttcgtaaagaagatgcgtttcgttttatactttttagcattgtaaa |
6333456 |
T |
|
| Q |
300 |
cccatgagttgcaaacaaagttgatggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||| || ||||||||||||| | ||| ||| |||| ||||| |
|
|
| T |
6333457 |
tccatgagttgcaaacaaagttgatggttccatggatgggaatatcttcaagcgtcaaacttacaaggaagaatt---ctcctagcatgaaattttcaat |
6333553 |
T |
|
| Q |
400 |
ataaaaagctcctggagttcccat |
423 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
6333554 |
ataaaatgctcctggaattcccat |
6333577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 6290497 - 6290855
Alignment:
| Q |
14 |
gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct |
113 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
6290497 |
gtcaggctcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttct |
6290596 |
T |
|
| Q |
114 |
tgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaaatgta--agatat |
211 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| || | | | | |||||| ||||||| || | || |||| |
|
|
| T |
6290597 |
tgtctatagtacactaatggagctggtgtttcacttggaaggtatgtctatattt-taaatcatatgaaggtgtcagattttgggaactatagtttatat |
6290695 |
T |
|
| Q |
212 |
ttaagatgtaagataaatatgatatttttgataattaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgc |
311 |
Q |
| |
|
|||| ||| |||||||||||| ||| | | |||||||||||||||||||| ||||||| ||||||||| |||| ||| ||||||| ||||||||||| |
|
|
| T |
6290696 |
ttaacatgcaagataaatatggtatat----tcattaccttgttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgc |
6290791 |
T |
|
| Q |
312 |
aaacaaagttgatggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattc |
375 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
6290792 |
aaacaaagttgatggttccatggttgggaacatcttcaagggtcaaacttacaagaaagaattc |
6290855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 6425279 - 6425684
Alignment:
| Q |
14 |
gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct |
113 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6425279 |
gtcaggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttct |
6425378 |
T |
|
| Q |
114 |
tgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaaatgtaagatattt |
213 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||| |||||||| ||||||| |||| ||||| |||||| ||||| |||| ||| || |
|
|
| T |
6425379 |
tgtctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttata-tttacttaatcatgtcaagttttgagaaataatttatactt |
6425477 |
T |
|
| Q |
214 |
aagatgtaagataaatatgatatttttgataattaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaa |
313 |
Q |
| |
|
|| | | |||||||||| ||| | |||||||||| || || || ||||| | | ||||||| ||||| | ||||||||||| ||||||||| |
|
|
| T |
6425478 |
aactagacaaataaatatgagtttt----tctttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaagagttgcaa |
6425573 |
T |
|
| Q |
314 |
acaaagttgatggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | || ||||| | ||||||||||||| || ||||||| |
|
|
| T |
6425574 |
acaaagttgatggttccatggtttggaacatcttcaagtgtcaaactcacaaggaagaact---catgttgcaaaaaattctcaatatagaatgctcctg |
6425670 |
T |
|
| Q |
414 |
gagttcccatgtca |
427 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
6425671 |
gaattcccatgtca |
6425684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 12 - 377
Target Start/End: Original strand, 6371291 - 6371664
Alignment:
| Q |
12 |
ttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactctt |
111 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
6371291 |
ttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactctt |
6371390 |
T |
|
| Q |
112 |
cttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttg-ga-----aaatgta |
205 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||| |||||||| |||| ||||| || |||||||||||||||| || |||| || |
|
|
| T |
6371391 |
cttgtctgtagtagactaatggagctggtgtttcacttagaaggtatgtctacattt---ttttatttcatagtgtcaaattttgagatatataaatata |
6371487 |
T |
|
| Q |
206 |
--agatatttaagatgtaagataaatatg-atat--ttttgataattaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaac |
300 |
Q |
| |
|
| |||| ||| |||||||||||||||| |||| | | | ||||||||||||| |||||| ||||| | || | || |||||||| ||||||| |
|
|
| T |
6371488 |
atatatatataacatgtaagataaatatgaatatgatagttttcattaccttgttggtaaagaagatgcgctcagagtgatagtttttagcattgtaaat |
6371587 |
T |
|
| Q |
301 |
ccatgagttgcaaacaaagttgatggttccatggtttggaacatcttcaagagtcaagctgacaaggaagaattcac |
377 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||| | ||| ||||| || |||||||||| ||||| |
|
|
| T |
6371588 |
ccatgagttgcagttaaagttgatggttccatgatttggaacatcattaagggtcaaactcacaaggaagagttcac |
6371664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 246 - 424
Target Start/End: Original strand, 7460971 - 7461146
Alignment:
| Q |
246 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
345 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7460971 |
ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgtgaatccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
7461070 |
T |
|
| Q |
346 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatg |
424 |
Q |
| |
|
|||||| ||||| || ||||||||||||| ||||||||| ||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
7461071 |
ttcaagtgtcaaactcacaaggaagaatt---caccttgcatatagttatcaatataaaaagctcctggaattcccatg |
7461146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 6364468 - 6364611
Alignment:
| Q |
20 |
atcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtcta |
119 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6364468 |
atcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctg |
6364567 |
T |
|
| Q |
120 |
tagtagactaatggaggtggtgtttcacttggaagatatgtcta |
163 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
6364568 |
tagtagactaaaggagctggtgtttcacttggaaggtatgtcta |
6364611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 6353589 - 6353738
Alignment:
| Q |
14 |
gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct |
113 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| ||||| || ||||||||||| || |||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
6353589 |
gtcaggctcacccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttct |
6353688 |
T |
|
| Q |
114 |
tgtctatagtagactaatggaggtggtgtttcacttggaagatatgtcta |
163 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6353689 |
tgtctgtagtacactaatggagccggtgtttcacttggaaggtatgtcta |
6353738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 6322603 - 6322766
Alignment:
| Q |
11 |
cttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactct |
110 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| || || ||| || |||| || |||||||||||||||||||| ||||| ||| |
|
|
| T |
6322603 |
cttgtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattct |
6322702 |
T |
|
| Q |
111 |
tcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattt |
174 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
6322703 |
tcttctctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttattt |
6322766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7460648 - 7460810
Alignment:
| Q |
1 |
agcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt |
100 |
Q |
| |
|
|||| ||||||| ||| |||||||||| |||||||||||||| || ||||| || || |||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
7460648 |
agctagctttctggtcgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagt |
7460747 |
T |
|
| Q |
101 |
gttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtcta |
163 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
7460748 |
cttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta |
7460810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 246 - 425
Target Start/End: Original strand, 6353961 - 6354137
Alignment:
| Q |
246 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
345 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||| ||||||| ||||||| |||||||||||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
6353961 |
ttaccttgttggcaaagaagatgcggtcggttttgtactttttagaattgtaaatccatgagttgcagacaaagtggatggatccatggtttggaacatc |
6354060 |
T |
|
| Q |
346 |
ttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgt |
425 |
Q |
| |
|
|||||| ||||| || ||||||||||||| ||||||||| | |||| || || ||||||||||| ||| ||||||||| |
|
|
| T |
6354061 |
ttcaagtgtcaaactcacaaggaagaatt---caccttgcataaaattatcgatgtaaaaagctccgggaattcccatgt |
6354137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 6322952 - 6323082
Alignment:
| Q |
245 |
attaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacat |
344 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| || || | ||| |||||| |||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
6322952 |
attaccttgttggcgaagaagatgcgtttcgttttatacttgtcagcactgtaaatccatgagttgcatacaaagttgatggttccatggtttggaatat |
6323051 |
T |
|
| Q |
345 |
cttcaagagtcaagctgacaaggaagaattc |
375 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |
|
|
| T |
6323052 |
cttcaagtgtcaaacttacaaggaagaattc |
6323082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 6392094 - 6392230
Alignment:
| Q |
23 |
acccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatag |
122 |
Q |
| |
|
||||| ||||||||||||||| || ||||| || || |||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
6392094 |
acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtag |
6392193 |
T |
|
| Q |
123 |
tagactaatggaggtggtgtttcacttggaagatatg |
159 |
Q |
| |
|
|| | |||||||| ||||||||| ||| |||| |||| |
|
|
| T |
6392194 |
tacagtaatggagctggtgtttcccttagaaggtatg |
6392230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 245 - 430
Target Start/End: Original strand, 6392436 - 6392618
Alignment:
| Q |
245 |
attaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| |||||||||||||| |||||| ||||| ||||| || ||||| |
|
|
| T |
6392436 |
attaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacat |
6392535 |
T |
|
| Q |
345 |
cttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg |
430 |
Q |
| |
|
||||||| ||||| || |||||||||| || || ||||| | |||||| || ||| |||||||||||| ||||||||| |||| |
|
|
| T |
6392536 |
cttcaagggtcaaactcacaaggaagattt---catcttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattg |
6392618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 245 - 430
Target Start/End: Original strand, 6411576 - 6411758
Alignment:
| Q |
245 |
attaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| |||||||||||||| |||||| ||||| ||||| || ||||| |
|
|
| T |
6411576 |
attaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacat |
6411675 |
T |
|
| Q |
345 |
cttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg |
430 |
Q |
| |
|
||||||| ||||| || |||||||||| || || ||||| | |||||| || ||| |||||||||||| ||||||||| |||| |
|
|
| T |
6411676 |
cttcaagggtcaaactcacaaggaagattt---catcttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattg |
6411758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 6264917 - 6265057
Alignment:
| Q |
11 |
cttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactct |
110 |
Q |
| |
|
|||||| || ||||||| ||||||||| ||||| || ||||| | || ||||||||||| ||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
6264917 |
cttgtcggggtcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactct |
6265016 |
T |
|
| Q |
111 |
tcttgtctatagtagactaatggaggtggtgtttcacttgg |
151 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
6265017 |
aattgtctatagtagacaagtggagcaggtgtttcacttgg |
6265057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 6411258 - 6411394
Alignment:
| Q |
23 |
acccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatag |
122 |
Q |
| |
|
||||| ||||||||||||||| || ||||| || || |||||| | ||||||||||| |||||||||||||||||||| ||||| ||||||| | ||| |
|
|
| T |
6411258 |
acccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtag |
6411357 |
T |
|
| Q |
123 |
tagactaatggaggtggtgtttcacttggaagatatg |
159 |
Q |
| |
|
|| |||||||| |||||| || ||||||||| |||| |
|
|
| T |
6411358 |
tacactaatggttgtggtgcttgacttggaaggtatg |
6411394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 6265477 - 6265599
Alignment:
| Q |
246 |
ttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatc |
345 |
Q |
| |
|
|||| |||||||| |||||||| || | |||| ||| ||||| || ||||||||||| |||||||||||||||| ||||||||| |||||| | ||| |
|
|
| T |
6265477 |
ttacattgttggcgaagaaaatacgatcagttaggtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatc |
6265576 |
T |
|
| Q |
346 |
ttcaagagtcaagctgacaagga |
368 |
Q |
| |
|
||||||||||| || ||||||| |
|
|
| T |
6265577 |
atcaagagtcaaactcacaagga |
6265599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 6458303 - 6458400
Alignment:
| Q |
65 |
ttctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtct |
162 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||| | ||||||||||| |||||| | |||||||| |||||||| |||||||||||| |||| |
|
|
| T |
6458303 |
ttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataatgatttaatggagctggtgtttgacttggaagatacgtct |
6458400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 6452174 - 6452302
Alignment:
| Q |
29 |
atcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagact |
128 |
Q |
| |
|
|||||| || ||||| || || || ||||| ||||||||||| || ||||| |||||||||||||||| | | | ||||||||||| |||| ||| | |
|
|
| T |
6452174 |
atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgattt |
6452273 |
T |
|
| Q |
129 |
aatggaggtggtgtttcacttggaagata |
157 |
Q |
| |
|
||||||| |||||||| |||||||||||| |
|
|
| T |
6452274 |
aatggagctggtgtttgacttggaagata |
6452302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 42694396 - 42694526
Alignment:
| Q |
29 |
atcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagact |
128 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||| |||||| | |||| |
|
|
| T |
42694396 |
atcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatggact |
42694495 |
T |
|
| Q |
129 |
aatggaggtggtgtttcacttggaagatatg |
159 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |
|
|
| T |
42694496 |
aatggagccggtgtttcactaggaagatatg |
42694526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 42686905 - 42686798
Alignment:
| Q |
247 |
taccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatct |
346 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
42686905 |
taccttgttggcaaagaaaatgcgtggacttttgtaaagttttgcgttgtaaacccaagagttgcatacaaatcgaatggttccatggtttggaacatct |
42686806 |
T |
|
| Q |
347 |
tcaagagt |
354 |
Q |
| |
|
|||||||| |
|
|
| T |
42686805 |
tcaagagt |
42686798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 42687261 - 42687133
Alignment:
| Q |
29 |
atcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagact |
128 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| | || |||||||||||||||||||| |||||| | | ||| ||||||| |||||| | |||| |
|
|
| T |
42687261 |
atcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctctatacttgact |
42687162 |
T |
|
| Q |
129 |
aatggaggtggtgtttcacttggaagata |
157 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |
|
|
| T |
42687161 |
agtggagatggtgtttcacttggaagata |
42687133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 42694694 - 42694816
Alignment:
| Q |
247 |
taccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatct |
346 |
Q |
| |
|
|||||| ||||||||||||||||| | | ||||| | ||| || || |||| ||| |||||||| ||||||| |||| ||||||| ||||||| ||| |
|
|
| T |
42694694 |
taccttattggcaaagaaaatgcggtcaagtttgtggtgtttggcattataaatccaggagttgcatacaaagtagatgcttccatgatttggaatgtct |
42694793 |
T |
|
| Q |
347 |
tcaagagtcaagctgacaaggaa |
369 |
Q |
| |
|
||||||||||| || |||||||| |
|
|
| T |
42694794 |
tcaagagtcaaactcacaaggaa |
42694816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 9603179 - 9603035
Alignment:
| Q |
18 |
ggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtc |
117 |
Q |
| |
|
|||||||| | ||||||||||||||| || ||||| | |||||||||||||| || | ||| || ||||||||||||| | | | ||| |||||||||| |
|
|
| T |
9603179 |
ggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtc |
9603080 |
T |
|
| Q |
118 |
tatagtagactaatggaggtggtgtttcacttggaagatatgtct |
162 |
Q |
| |
|
| |||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
9603079 |
tgtagtagactaatggagctggtgtttgacttggaagatatgtct |
9603035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 36744021 - 36743945
Alignment:
| Q |
24 |
cccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt |
100 |
Q |
| |
|
|||| ||||||||| ||||| || |||||||| || |||||||| | ||||| | ||||||||||||| |||||||| |
|
|
| T |
36744021 |
cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt |
36743945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 35722388 - 35722304
Alignment:
| Q |
13 |
tgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaa |
97 |
Q |
| |
|
|||||||||| || | ||||||||||||||| || |||||||| || || ||| |||||||||||| ||||| ||||||||| |
|
|
| T |
35722388 |
tgtcaggatctccaagatcattgtagacatcataatcatagattctgtctgatttcttacgctctccttctccatttcctcttaa |
35722304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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