View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0700_low_4 (Length: 446)
Name: NF0700_low_4
Description: NF0700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0700_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 27 - 374
Target Start/End: Complemental strand, 8203251 - 8202904
Alignment:
| Q |
27 |
taaagctggatgcattagccttgttgatattgttgaaggcaggttccccccatcatgattattttcgagctttatatttggcttggaatttaagtttcaa |
126 |
Q |
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| T |
8203251 |
taaagctggatgcattagccttgttgatattgttgaaggcaggttccccccatcatgattattttcgagctttatatttggcttggaatttaagtttcaa |
8203152 |
T |
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| Q |
127 |
tttctattagttaaatgatttgatttttgaatttacagaaactcagaacccgctgcnnnnnnnnctttacaaaccttgtccatgattttgccctttttcc |
226 |
Q |
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| T |
8203151 |
tttctattagttaaatgatttgatttttgaatttacagaaactcagaacccgctgcttttttatctttacaaaccttgtccatgattttgccctttttcc |
8203052 |
T |
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| Q |
227 |
tgatgagaattagttctcaactgaagattacattattaatcctacaattaaccccagaaatcagaagattttctgtttttgatgcatgtgaaccatggaa |
326 |
Q |
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| T |
8203051 |
tgatgagaattagttctcaactgaagattacattattattcctacaattaaccccagaaatcagaatattttctgtttttgatgcatgtgaaccatggaa |
8202952 |
T |
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| Q |
327 |
aacatgattgtaaattcctgtctgtatgtatttttgccgtagaattat |
374 |
Q |
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| T |
8202951 |
aacatgattgtaaattcctgtctgtaggtctttttgccgtagaattat |
8202904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 42360379 - 42360037
Alignment:
| Q |
27 |
taaagctggatgcattagccttgttgatattgttgaaggcaggttcccccc----------atcatgattattttcgagctttatatttggcttggaatt |
116 |
Q |
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| T |
42360379 |
taaagctggatgcattagtcttgttgatgttgttgaaggcaggttccccccccccccccccatcatgattattttcgagctttatacttggcttggaatt |
42360280 |
T |
|
| Q |
117 |
taagtttcaatttctattagttaaatgatttgatttttgaatttacagaaactcagaacccgctgcnnnnnnnn--ctttacaaaccttgtccatgattt |
214 |
Q |
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|| |||||||||||| ||||||||||||| || | ||| ||||||||| ||| ||| | ||||| ||| ||||| | |||||||||||| |
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| T |
42360279 |
caaatttcaatttctactagttaaatgatt-gaatattgtatttacagacacttagactctgctgctttattttttcttcacaaaacctgtccatgattt |
42360181 |
T |
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| Q |
215 |
tgccctttttcctgatgagaattagttctcaa-ctgaagattacattattaatcctacaattaaccccagaaatcagaagattttctgtttttgatgcat |
313 |
Q |
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| |||||||| ||||||| |||||||||| || | ||||||||||| ||||||||||||||||||||||||||| ||||| | ||| ||||||||| || |
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| T |
42360180 |
tacccttttttctgatgaaaattagttctgaaaccgaagattacatgattaatcctacaattaaccccagaaattcgaagaatatctatttttgatgtat |
42360081 |
T |
|
| Q |
314 |
gtgaaccatggaaaacatgattgtaaattcctgtctgtatgtat |
357 |
Q |
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||| || |||||||||||||||||||||||| ||||||||||| |
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| T |
42360080 |
gtgctccttggaaaacatgattgtaaattcctatctgtatgtat |
42360037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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