View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0701_low_1 (Length: 612)
Name: NF0701_low_1
Description: NF0701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0701_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 7253590 - 7253412
Alignment:
| Q |
19 |
cagagaccagaaataggttgcaagtaattgattggtccttcttatcaaattatgacacaactaccacgtttattacatataggtaggtgaccatatgaca |
118 |
Q |
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| T |
7253590 |
cagaaaccagaaataggttgcaagtaattgattg-tccttcttatcaaattatgacacaactaccacgtttattacatataggtaggtgaccatatgaca |
7253492 |
T |
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| Q |
119 |
gataaatgaataagacaatatatannnnnnnngaaagagaataactatagacttttactacatgactgaaatttaatttaaa |
200 |
Q |
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||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7253491 |
gataaatgaataagacaattttt--tttttttgaaagagaataactatagacttttactacatgactgaaatttaatttaaa |
7253412 |
T |
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