View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0701_low_3 (Length: 560)
Name: NF0701_low_3
Description: NF0701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0701_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 8e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 348 - 541
Target Start/End: Complemental strand, 9965636 - 9965440
Alignment:
| Q |
348 |
gattgcatataattcagcagccaaccaaattcattacaattcttaatactaaagcatat----cacaaaaattctcaaactaaatcaggctctgatatcc |
443 |
Q |
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| T |
9965636 |
gattgcatataattcagcagccaaccaaattcattacaattcttaatactaaagcatatatatcacaaaaattctcaaactaaatcaggctctgatatcc |
9965537 |
T |
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| Q |
444 |
catgttcaaagtaaatatgaatttcatgcttgttgcaattggcattgagacacttatctatgatgtcttggtttaacaactcaacatacaccccctca |
541 |
Q |
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| T |
9965536 |
catgt-caaagtaaatatgaatttcatccttgttgcaattggcactgagacacttatctatgatgtcttggtttaacaactcaacgaactccccctca |
9965440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 351 - 514
Target Start/End: Complemental strand, 9959544 - 9959381
Alignment:
| Q |
351 |
tgcatataattcagcagccaaccaaattcattacaattcttaatactaaagcatatcacaaaaattctcaaactaaatcaggctctgatatcccatgttc |
450 |
Q |
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| T |
9959544 |
tgcatattattcagcagccaattaaatttattacaattcttaacactaaagcatatcacaaaaattctcaagctaaattgggcactgatatcccatgttc |
9959445 |
T |
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| Q |
451 |
aaagtaaatatgaatttcatgcttgttgcaattggcattgagacacttatctatgatgtcttgg |
514 |
Q |
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| T |
9959444 |
aaagtaaatatgaatttcatgcttgttgcaacttgcaatgagacacttatctatgatctcttgg |
9959381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 9965960 - 9965862
Alignment:
| Q |
30 |
cacacccaccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatctttcattgtttaaacgatattcactattatg |
128 |
Q |
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| T |
9965960 |
cacacccaccacaaagcagacaaaaagacttgaggaggttgagattgaagaccttccttgatccaatctttcattgtttaaacgatattcactattatg |
9965862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 9965771 - 9965688
Alignment:
| Q |
218 |
gaccaaatatatcgattttcatattcaacgaacaaacatacatagaaattctttattttctctacaaacatattttatgctacc |
301 |
Q |
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| T |
9965771 |
gaccaaatatatcgattttcatatcgaacgaacaaacgtacatagaaattctttattttctctacaaacatattttatgctacc |
9965688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 9959654 - 9959606
Alignment:
| Q |
248 |
aacaaacatacatagaaattctttattttctctacaaacatattttatg |
296 |
Q |
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| T |
9959654 |
aacaaacgtacgtagaaattttctattttttctacaaacatattttatg |
9959606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 41286788 - 41286858
Alignment:
| Q |
30 |
cacacccaccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatcttt |
100 |
Q |
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| T |
41286788 |
cacacccaccacaaggcagacataaagactttaggaagttgagattgaagaccttccttaatccaatcttt |
41286858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 1557002 - 1557071
Alignment:
| Q |
30 |
cacacccaccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatctt |
99 |
Q |
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| T |
1557002 |
cacacccaccacaaagcagatagaaaggcttgaggaggttgagattgaagaccttcctttatccaatctt |
1557071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 36343712 - 36343777
Alignment:
| Q |
35 |
ccaccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatcttt |
100 |
Q |
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| T |
36343712 |
ccaccacaaggcatacagaaagacttgaggaggttgagattgaagaccctccttaatccaatcttt |
36343777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 11347982 - 11348024
Alignment:
| Q |
54 |
aagactagagaaggttgagattgaagaccttccttaatccaat |
96 |
Q |
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| T |
11347982 |
aagacttgaggagattgagattgaagaccttccttaatccaat |
11348024 |
T |
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