View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0701_low_5 (Length: 389)

Name: NF0701_low_5
Description: NF0701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0701_low_5
NF0701_low_5
[»] chr1 (9 HSPs)
chr1 (20-361)||(4570624-4570970)
chr1 (20-361)||(4014992-4015343)
chr1 (175-361)||(10218835-10219028)
chr1 (180-361)||(21855410-21855592)
chr1 (179-360)||(4016800-4016981)
chr1 (176-357)||(4366526-4366708)
chr1 (267-361)||(17560800-17560894)
chr1 (267-357)||(39379092-39379182)
chr1 (27-86)||(4017083-4017139)
[»] chr5 (1 HSPs)
chr5 (180-361)||(24330926-24331108)
[»] chr7 (21 HSPs)
chr7 (176-361)||(29922020-29922200)
chr7 (176-361)||(29859311-29859497)
chr7 (176-357)||(29106665-29106853)
chr7 (267-361)||(29867188-29867279)
chr7 (176-341)||(29885105-29885271)
chr7 (287-361)||(29874480-29874554)
chr7 (176-357)||(29899225-29899413)
chr7 (267-361)||(29881205-29881299)
chr7 (267-361)||(29454130-29454224)
chr7 (270-357)||(29445687-29445774)
chr7 (267-345)||(29920086-29920164)
chr7 (56-89)||(29880951-29880984)
chr7 (176-220)||(29881113-29881157)
chr7 (31-77)||(24021453-24021499)
chr7 (61-90)||(22021074-22021103)
chr7 (312-357)||(22100487-22100532)
chr7 (176-221)||(29867096-29867141)
chr7 (313-357)||(19637248-19637292)
chr7 (312-360)||(20352089-20352137)
chr7 (61-89)||(22036792-22036820)
chr7 (312-348)||(22063636-22063672)
[»] chr3 (2 HSPs)
chr3 (267-357)||(3625683-3625773)
chr3 (176-217)||(3625591-3625632)
[»] chr4 (9 HSPs)
chr4 (267-357)||(3557675-3557765)
chr4 (267-357)||(3560989-3561079)
chr4 (267-357)||(3565693-3565783)
chr4 (311-357)||(53774833-53774879)
chr4 (56-96)||(3561311-3561351)
chr4 (312-357)||(11971013-11971058)
chr4 (312-357)||(11981714-11981759)
chr4 (267-303)||(1686370-1686406)
chr4 (176-220)||(1686454-1686498)
[»] chr2 (1 HSPs)
chr2 (318-361)||(20975558-20975601)
[»] scaffold0867 (1 HSPs)
scaffold0867 (312-357)||(4700-4745)
[»] chr6 (2 HSPs)
chr6 (312-357)||(20770644-20770689)
chr6 (313-357)||(19746725-19746769)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 4570624 - 4570970
Alignment:
Q  20 gacatcatcagaggtcagagttctcaatttgggtgatgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttg 119  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570624 gacagcatcagaggtcagagttctcaatttgggtggtgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttg 4570723  T
Q  120 agtggcactgtgaactggttggttactattcacagcagtactaatgtggaacaagctgttattgtttctcttgatttggagacggagacatacaatcaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570724 agtggcactgtgaactggttggttactattcacagcagtactaatgtggaacaagctgttattgtttctcttgatttggagacggagacatacaatcaat 4570823  T
Q  220 acatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattg----gtgtgttgggaggctgcctttgtttttcttattcacacagggaaa 314  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  4570824 acatggtgcctcgtggggttgatgaagtgccgccgaactagcctactattggtgtgtgtgttgggaggctgcctttgtttttcttattcacacagggaaa 4570923  T
Q  315 ctgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4570924 ctgattttgttatatggcaaatgaagaaatttggggttgaagattct 4570970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 4015343 - 4014992
Alignment:
Q  20 gacatcatcagaggtcagagttctcaatttgggtgatgatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttg 119  Q
    |||| ||||||| || | ||||||||| ||||||| |||||   |||||||||| |||||||||||||||  |||||||| |||| ||| ||||| ||||    
T  4015343 gacaacatcagatgtgaaagttctcaacttgggtgttgatg---tttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttg 4015247  T
Q  120 agtggcactgtgaactggttggttac------tattcacagcagtactaatgtggaacaagctgttattgtttctcttgatttggagacggagacataca 213  Q
    ||||| ||| | |||||||||| |||      |||||||| ||||  || |||||||||  ||||||||||||| |||||||||||||| ||| | ||||    
T  4015246 agtggtactataaactggttggctacgcctactattcacaccagtgatactgtggaacactctgttattgtttcacttgatttggagacagaggcgtaca 4015147  T
Q  214 atcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttgggaggctgcctttgtttttcttattcacacaggga 312  Q
    | |||||||  || |||||||| ||||||||||||| |||  ||| | | |||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  4015146 agcaatacacagttcctcgtggcgttgatgaagtgctgcctgactcgccaactattggtgtgctgggaggctgcctttgtttttcttatttgcacaggga 4015047  T
Q  313 aac------tgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    |||      |||| ||||||||||||| |||||||||||||||||||||||||||    
T  4015046 aactcattttgatattgttatatggcagatgaagaaatttggggttgaagattct 4014992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 175 - 361
Target Start/End: Original strand, 10218835 - 10219028
Alignment:
Q  175 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgc---cgaacttg----ctactat 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||| ||||| |||   || ||       | |||||    
T  10218835 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaacacaccaactat 10218934  T
Q  268 tggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    |||||||||||| || |||||||||||||||| ||  |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  10218935 tggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagattct 10219028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 361
Target Start/End: Complemental strand, 21855592 - 21855410
Alignment:
Q  180 attgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttgg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   | | ||||||||||| |||     
T  21855592 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 21855493  T
Q  279 gaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    | ||||| ||||||||||| |||||  ||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||    
T  21855492 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattct 21855410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 179 - 360
Target Start/End: Complemental strand, 4016981 - 4016800
Alignment:
Q  179 tattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttg 277  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||| |||||   || || | |||||| ||||||||    
T  4016981 tattgtttctcttgatttgg-gacggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttacatgccaactattagtgtgttg 4016883  T
Q  278 ggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattc 360  Q
    || |||||||||||||||||||||||  | ||| ||||  ||||   ||| ||||| |||||||||||||| |||||||||||    
T  4016882 gggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattc 4016800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 357
Target Start/End: Complemental strand, 4366708 - 4366526
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc----gaacttgctactattggt 271  Q
    |||||||||||| |||||| |||  || |||||||||||||||||| || ||||||||||  |||| |||||||| ||    ||||   | ||  |||||    
T  4366708 tgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccacctactgaac---caacagttggt 4366612  T
Q  272 gtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    |||||||| | |||||||||||||||||||||  ||| | |||||||||||||| ||||||| ||||||||||| |||||||||||    
T  4366611 gtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaaga 4366526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 17560894 - 17560800
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||||||||||| | ||| ||||||||||||||||   ||| |||||  ||||| ||||||||||| |||||||||||||||||||||||||||    
T  17560894 ttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaagattct 17560800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 39379182 - 39379092
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||||||||||| | ||| ||||||||||||||||   ||||  ||||||||||| |||||||||| |||||| ||||||||||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaaga 39379092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 4017139 - 4017083
Alignment:
Q  27 tcagaggtcagagttctcaatttgggtgatgatgatgtttggagaaatattgaaagtttt 86  Q
    |||||||| | |||||||||||||||||||||||   |||||||||||||||| ||||||    
T  4017139 tcagaggtgaaagttctcaatttgggtgatgatg---tttggagaaatattgacagtttt 4017083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 361
Target Start/End: Complemental strand, 24331108 - 24330926
Alignment:
Q  180 attgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttg-ctactattggtgtgttgg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   | | ||||||||||| |||     
T  24331108 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 24331009  T
Q  279 gaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    | ||||| ||||||||||| |||||  ||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||    
T  24331008 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattct 24330926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 176 - 361
Target Start/End: Complemental strand, 29922200 - 29922020
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgcc----gccgaacttgctactattggt 271  Q
    |||||| |||||||||||||| | |||||||||||||||||||||  || ||||||      |||||||||||||    || ||||   | ||  |||||    
T  29922200 tgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctc------ttgatgaagtgccatctgcagaac---caaccgttggt 29922110  T
Q  272 gtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    |||||||| ||||||||||||||||||||| |  |||  ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  29922109 gtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagattct 29922020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 176 - 361
Target Start/End: Original strand, 29859311 - 29859497
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc-gaacttgctactattggtgtg 274  Q
    |||||||||||| |||||||||| ||  || ||||||||||||||| |  ||||||||||| ||||||| |||||||| |   |  | ||||||||||||    
T  29859311 tgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgccgcctgtgataccaactattggtgtg 29859410  T
Q  275 ttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||| | |   ||||||||||||||||   ||| ||||| |||||| ||||||||| | |||||||||||||| ||||||||||||    
T  29859411 ttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagattct 29859497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 357
Target Start/End: Original strand, 29106665 - 29106853
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgtg 274  Q
    |||||||||||| ||||||| |  || |||||||||||||||||||| | ||||||||||| |||||||||||||| |  |||   | ||  ||||||||    
T  29106665 tgttattgtttcacttgattggaggatggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgtg 29106764  T
Q  275 ttgggaggctgcctttgtttttcttattcacacagggaaac------tgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| |||||||||||||||||||||| | ||    ||||      |||||||||| ||||||| |||||||||||||||||||||||    
T  29106765 ttggggggctgcctttgtttttcttatttatacgtaaaaacagattttgattttgttgtatggcagatgaagaaatttggggttgaaga 29106853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 29867188 - 29867279
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||||||||||| | |||||||||||||||||||||  |   ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattctaa---ggaaactgattttattatatggcaaatgaagaaattcggggttgaagattct 29867279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 341
Target Start/End: Original strand, 29885105 - 29885271
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgtg 274  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| |||||| |||| |||||||||||||| | |      | ||  ||||||||    
T  29885105 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgtggagccaacatttggtgtg 29885204  T
Q  275 ttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaaga 341  Q
     | || ||||||||||||||||||||||    || |||||||||||||||||||||||| |||||||    
T  29885205 ctagggggctgcctttgtttttcttatttttccaaggaaactgattttgttatatggcagatgaaga 29885271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 29874480 - 29874554
Alignment:
Q  287 ctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||||||||||||||   ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  29874480 ctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattct 29874554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 357
Target Start/End: Original strand, 29899225 - 29899413
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgtg 274  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| |||||| |||| |||||||||||||| | |      | ||  ||||||||    
T  29899225 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgtggagccaacatttggtgtg 29899324  T
Q  275 ttgggaggctgcctttgtttttcttattcacacagggaaac------tgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| ||||||||||||||||||| ||   |||   | ||      |||||||||||||||||| |||||||||||||||||||||||    
T  29899325 ttggggggctgcctttgtttttcttgtttttacaataataccaattttgattttgttatatggcagatgaagaaatttggggttgaaga 29899413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 29881205 - 29881299
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||||||||||  | ||||||||| |||| |||||   ||| ||||||||||||| || | |||||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattct 29881299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 29454224 - 29454130
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||||| ||||| ||  |||||||||||||||||||  ||| |||| | ||||||||||||||||  |||| ||||||||| ||||||||||||    
T  29454224 ttggtgttttggggggaagcctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattct 29454130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 29445774 - 29445687
Alignment:
Q  270 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    |||||||||| |||| |||||||| ||||||||   ||| |||||| |||||| |||||||||| |||||| |||| |||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaaga 29445687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 29920164 - 29920086
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatt 345  Q
    |||||||||||||||||||||||| || |||||||||  ||| |||||| || ||| | |||||| | |||||||||||    
T  29920164 ttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaatt 29920086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 29880951 - 29880984
Alignment:
Q  56 tgatgatgtttggagaaatattgaaagttttcct 89  Q
    ||||||||||||||||||||||||||||||||||    
T  29880951 tgatgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 29881113 - 29881157
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaata 220  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  29881113 tgttattgtttcacttgatttggggactgagacatacaatcaata 29881157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 24021453 - 24021499
Alignment:
Q  31 aggtcagagttctcaatttgggtgatgatgatgtttggagaaatatt 77  Q
    ||||||||||||||| ||||| ||||||||||  |||||||||||||    
T  24021453 aggtcagagttctcagtttggatgatgatgattgttggagaaatatt 24021499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 22021074 - 22021103
Alignment:
Q  61 atgtttggagaaatattgaaagttttccta 90  Q
    ||||||||||||||||||||||||||||||    
T  22021074 atgtttggagaaatattgaaagttttccta 22021103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 22100487 - 22100532
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| ||||    
T  22100487 aaactcattttattatatggcaaatgaagaaatttggagttcaaga 22100532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 29867096 - 29867141
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaatac 221  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||||    
T  29867096 tgttattgtttcacttgatttggggactgagaaatacaatcaatac 29867141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 19637292 - 19637248
Alignment:
Q  313 aactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    |||||||||| ||||||||||||||||| ||||||| ||| ||||    
T  19637292 aactgattttattatatggcaaatgaaggaatttggagttcaaga 19637248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 20352089 - 20352137
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattc 360  Q
    ||||| ||||||| |||||| |||||||| ||||||| |||||||||||    
T  20352089 aaactcattttgtaatatgggaaatgaaggaatttggagttgaagattc 20352137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 22036792 - 22036820
Alignment:
Q  61 atgtttggagaaatattgaaagttttcct 89  Q
    |||||||||||||||||||||||||||||    
T  22036792 atgtttggagaaatattgaaagttttcct 22036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 22063636 - 22063672
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttgg 348  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  22063636 aaactcattttgttatatggcaaatgaaggaatttgg 22063672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 3625683 - 3625773
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||||||||||| | |||||||||||||||||||||  ||| || |||  || || ||||||||||||||||||||||||||||||||||    
T  3625683 ttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaaga 3625773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 3625591 - 3625632
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatca 217  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  3625591 tgttattgtttcacttgatttggggactgagacatacaatca 3625632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 3557675 - 3557765
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||||||||| | | ||| |||||||||||||||||  ||| |||||| |||||| |||||||||| |||||| ||||||||||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaaga 3557765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 3561079 - 3560989
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||||| ||||| |  ||||||||||||||||||||  ||| |||||| |||||| |||| ||||| ||||| |||||||||||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaaga 3560989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 3565693 - 3565783
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||||||||| | | ||||||||||||||||||||   | | | |||| |||||| |||||||||| |||||| ||||||||||||||||    
T  3565693 ttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaaga 3565783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 53774833 - 53774879
Alignment:
Q  311 gaaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  53774833 gaaactcattttgttatatggcaaatgaaggaatttggagttgaaga 53774879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 3561351 - 3561311
Alignment:
Q  56 tgatgatgtttggagaaatattgaaagttttcctactgttc 96  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  3561351 tgataatgtttggagaaatattgaaagttttcctattgttc 3561311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 11971058 - 11971013
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| ||||||||||||||||||||||| ||||||| || |||||    
T  11971058 aaactcattttgttatatggcaaatgaaggaatttggagtggaaga 11971013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 11981759 - 11981714
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| ||||||||||||||||||||||| ||||||| || |||||    
T  11981759 aaactcattttgttatatggcaaatgaaggaatttggagtggaaga 11981714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 1686406 - 1686370
Alignment:
Q  267 ttggtgtgttgggaggctgcctttgtttttcttattc 303  Q
    ||||||||||||| | |||||||||||||||||||||    
T  1686406 ttggtgtgttgggggactgcctttgtttttcttattc 1686370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 1686498 - 1686454
Alignment:
Q  176 tgttattgtttctcttgatttggagacggagacatacaatcaata 220  Q
    |||||||||||| ||| |||||| ||| |||||||||||||||||    
T  1686498 tgttattgtttcacttaatttggggactgagacatacaatcaata 1686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 20975558 - 20975601
Alignment:
Q  318 attttgttatatggcaaatgaagaaatttggggttgaagattct 361  Q
    ||||||||||||||||||||| | ||||||| ||||||||||||    
T  20975558 attttgttatatggcaaatgagggaatttggagttgaagattct 20975601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 4745 - 4700
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| ||||    
T  4745 aaactcattttattatatggcaaatgaagaaatttggagttcaaga 4700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 20770644 - 20770689
Alignment:
Q  312 aaactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    ||||| ||||||||||||||||||||||| |||||||  |||||||    
T  20770644 aaacttattttgttatatggcaaatgaaggaatttggaattgaaga 20770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 19746769 - 19746725
Alignment:
Q  313 aactgattttgttatatggcaaatgaagaaatttggggttgaaga 357  Q
    |||||| ||||||||||||||||||||||| ||||| ||| ||||    
T  19746769 aactgaatttgttatatggcaaatgaagaagtttggagttcaaga 19746725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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