View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0701_low_6 (Length: 351)
Name: NF0701_low_6
Description: NF0701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0701_low_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 339
Target Start/End: Original strand, 38060994 - 38061308
Alignment:
| Q |
25 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
38060994 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccattg |
38061093 |
T |
|
| Q |
125 |
atgttattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
224 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38061094 |
ttattattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
38061193 |
T |
|
| Q |
225 |
aattcattttaattttttccacctcatcactttcttgatgccaatgaaccgagtacagaatttggtataaatttccatatctatgtggaaatggaatttt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38061194 |
aattcattttaattttttccacctcatcactttcttgatgccaatgaaccgagtacaaaatttggtataaatttccatatctatgtggaaatggaatttt |
38061293 |
T |
|
| Q |
325 |
agactctgaaatatt |
339 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38061294 |
agactctgaaatatt |
38061308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 339
Target Start/End: Complemental strand, 38059460 - 38059146
Alignment:
| Q |
25 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatta |
124 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||| |
|
|
| T |
38059460 |
aggatcaactttagtcttcacttttatcaatcttttgaagttgttcttaaagtatttaacaccccaaacactagcttgcttgtagcttgtgtatccatta |
38059361 |
T |
|
| Q |
125 |
atgttattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
224 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||| |
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|
| T |
38059360 |
atattattcaccccaatatcaagatctctatagttaatatatgcagctcttggagactttgaaacaaaaggttccatataactgtacaattttccaatcc |
38059261 |
T |
|
| Q |
225 |
aattcattttaattttttccacctcatcactttcttgatgccaatgaaccgagtacagaatttggtataaatttccatatctatgtggaaatggaatttt |
324 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||||||||||| |
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|
| T |
38059260 |
aattcattttcattttttctacctcatcactttcttgatgccaatgaactgagtaataaatttgatataaatttccatgtctgtgtggaaatggaatttc |
38059161 |
T |
|
| Q |
325 |
agactctgaaatatt |
339 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38059160 |
agactctgaaatatt |
38059146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 25 - 336
Target Start/End: Complemental strand, 38073794 - 38073483
Alignment:
| Q |
25 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatta |
124 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
38073794 |
aggatcaacttttgtcttcacttttgccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccatta |
38073695 |
T |
|
| Q |
125 |
atgttattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
224 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38073694 |
atgttattcaccccaatatcaaggtctctataattaatatatgcagctcttggagactttgaaacaaaaggttccatataactataaagttttctaatcc |
38073595 |
T |
|
| Q |
225 |
aattcattttaattttttccacctcatcactttcttgatgccaatgaaccgagtacagaatttggtataaatttccatatctatgtggaaatggaatttt |
324 |
Q |
| |
|
|||| || | | |||||||||||||||| |||||||||||| || || | || |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
38073594 |
aattgatgtgcaacttttccacctcatcaccttcttgatgccagtgcactgcatattgaattttgtataaggttccatatctatgtggaaatggaatttc |
38073495 |
T |
|
| Q |
325 |
agactctgaaat |
336 |
Q |
| |
|
||| |||||||| |
|
|
| T |
38073494 |
agattctgaaat |
38073483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 25 - 337
Target Start/End: Complemental strand, 38087304 - 38086992
Alignment:
| Q |
25 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatta |
124 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
38087304 |
aggatcaactttagtcttaacttttgccaaccttttgaagttatttttgaagtacttaacaccccaaatactagcttccttatagcttgtgtacccatta |
38087205 |
T |
|
| Q |
125 |
atgttattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
224 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38087204 |
atgttattcacaccaatatcaaggtctctgtaattaatatatgcagctctcggagactttgtaacaaaaggttccatataactatacagttttctaatcc |
38087105 |
T |
|
| Q |
225 |
aattcattttaattttttccacctcatcactttcttgatgccaatgaaccgagtacagaatttggtataaatttccatatctatgtggaaatggaatttt |
324 |
Q |
| |
|
|||| || | | | ||||||||||||||| |||||||||||||||||||||||| |||| | |||| |||||| |||||| ||||||||||||| |
|
|
| T |
38087104 |
aattaatgtgcagtgtttccacctcatcaccttcttgatgccaatgaaccgagtattgaatcatgaataagtttccacttctatgaggaaatggaatttc |
38087005 |
T |
|
| Q |
325 |
agactctgaaata |
337 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38087004 |
agactctgaaata |
38086992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 25 - 337
Target Start/End: Complemental strand, 38082876 - 38082564
Alignment:
| Q |
25 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatta |
124 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||| | |
|
|
| T |
38082876 |
aggatcaactttggtcttcacatttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatca |
38082777 |
T |
|
| Q |
125 |
atgttattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
224 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
38082776 |
atgttattcacaccaatatcaaggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatcc |
38082677 |
T |
|
| Q |
225 |
aattcattttaattttttccacctcatcactttcttgatgccaatgaaccgagtacagaatttggtataaatttccatatctatgtggaaatggaatttt |
324 |
Q |
| |
|
|||| || | | ||||||||||||||||| ||| || ||||||| |||| ||| |||| || ||||||||||| | |||||||||||||||||||| |
|
|
| T |
38082676 |
aattaatgtgcagtttttccacctcatcaccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttc |
38082577 |
T |
|
| Q |
325 |
agactctgaaata |
337 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38082576 |
agactctgaaata |
38082564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 37955131 - 37954928
Alignment:
| Q |
25 |
aggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccatta |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
37955131 |
aggatcaactttggtcttcacttttgccaatcttttgaagttattcttgaagtacttaacaccccatatgctagctttcttatagcttgtgtatccattg |
37955032 |
T |
|
| Q |
125 |
atgttattcaccccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatcc |
224 |
Q |
| |
|
| |||||||||||||| ||||| ||||||||||| | ||||||| ||||||| |||||||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
37955031 |
ttattattcaccccaatgtcaaggtctctataattcacatatgcacctcttggagactttgaaacaaaaggttccatataaatataaagttttctaatcc |
37954932 |
T |
|
| Q |
225 |
aatt |
228 |
Q |
| |
|
|||| |
|
|
| T |
37954931 |
aatt |
37954928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 38078211 - 38078170
Alignment:
| Q |
298 |
tccatatctatgtggaaatggaattttagactctgaaatatt |
339 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
38078211 |
tccatatctatgtggaaatggaatttcaaattctgaaatatt |
38078170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 2197481 - 2197426
Alignment:
| Q |
140 |
atatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaagg |
195 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
2197481 |
atatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
2197426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 2153280 - 2153227
Alignment:
| Q |
142 |
atcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaagg |
195 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
2153280 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
2153227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 2176939 - 2176886
Alignment:
| Q |
142 |
atcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaagg |
195 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
2176939 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
2176886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 2184894 - 2184841
Alignment:
| Q |
142 |
atcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaagg |
195 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
2184894 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
2184841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 35539368 - 35539318
Alignment:
| Q |
140 |
atatcaagatctctataattgatatatgcagctcttggtgactttgaaaca |
190 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
35539368 |
atatcaagatccctatagttgtaatatgcagctcttggagactttgaaaca |
35539318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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