View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0702_low_2 (Length: 484)
Name: NF0702_low_2
Description: NF0702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0702_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 463
Target Start/End: Complemental strand, 45830813 - 45830358
Alignment:
| Q |
9 |
caataatattcaatctagaagttnnnnnnn-gtagacaataccatacctccacattctgaacgtcatgaattatgatctatcaaacacaaaatggcattg |
107 |
Q |
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| T |
45830813 |
caataatattcaatctagaagttaaaaaaaagtagacaataccatacctctacattctgaacgtcatgaattatgatctatcaaacacaaaatggcattg |
45830714 |
T |
|
| Q |
108 |
attctcgaactgcagtaacacattaaaaaatgattcaaacattttgtaatctcaattcaatatgaaaaattacagtcccttaattaaacatgaagaacac |
207 |
Q |
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| T |
45830713 |
atcctcgaactgcagcaacacattaaaaaatgattcaaaaattttgtaatctcaattcaatatgaaaaattacagtcccttaattaaacatgaagaacac |
45830614 |
T |
|
| Q |
208 |
ctcgtagagaagtaggattaacatgtatactcgttgcaaaatgtaagaacctttgtgcaagaaacaccatccattttggaatcacatctcatacacgatt |
307 |
Q |
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| T |
45830613 |
ctcgtaaagaagtaggattaacatatatactcgttgcaaaatgtaagaacctttgtgcaagaaacaccatccattttggaatcacatctcatacacaatt |
45830514 |
T |
|
| Q |
308 |
tctaagtttatttagataaatcttaactccacattatcagtaatttgtaggatttagaattagccaacttctcatgannnnnnnncaaagcacatggttc |
407 |
Q |
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| T |
45830513 |
tctgagtttatttagataaatcttaactccacattatcagtaatttgtaggatttagaattagccaaattctcatgattttttttcaaagcacatggttc |
45830414 |
T |
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| Q |
408 |
aggcatgaaataagctacttcggtgaagtttttaagaaaatttaatgatactaagt |
463 |
Q |
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| T |
45830413 |
aggcatgaaataagctacttcggtgaagtttctaagaaaatttaatgatactaagt |
45830358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 171 - 443
Target Start/End: Original strand, 48621542 - 48621816
Alignment:
| Q |
171 |
gaaaaattacagtcccttaattaaacatgaagaacacctcgtaga-gaagtaggattaacatgtatactcgttgcaaaatgtaagaacctttgtgcaaga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |
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| T |
48621542 |
gaaaaattacagtcccttaattaaacatgaagaacaccccgtacaagaagtaggattaacatatatactcattgcaaaatgtaagaacctttgagcaaga |
48621641 |
T |
|
| Q |
270 |
aacaccatccattttggaatcacatctcatacacgatttctaagtttatttagataaatcttaactccacattatcagtaa-tttgtaggatttagaatt |
368 |
Q |
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|||| |||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
48621642 |
aacatcatccattttagaatcacatcgcatacatgatttctgagtttatttagataaatcttaactccacagtatcagtaattttgtaggatttagaatt |
48621741 |
T |
|
| Q |
369 |
agccaacttctcatgannnnnnnncaaagcacatggttcaggcatgaaataagctacttcggtgaagtttttaag |
443 |
Q |
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| T |
48621742 |
agccaacttctcaggattttttttcaaagcacatggttcaggcatgaaattagctacttcagtgaaatttctaag |
48621816 |
T |
|
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