View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0702_low_4 (Length: 436)
Name: NF0702_low_4
Description: NF0702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0702_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Original strand, 44283538 - 44283942
Alignment:
| Q |
30 |
gagacatgacctgaaaataagttttgaagtatgagacatgctcaccatacaagattcattgagccacctaccatcgagtcacttgacattaggccaacca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283538 |
gagacatgacctgaaaataagttttgaagtatgagacatactcaccatacaagattcattgagccacctaccatcgagtcacttgacattaggccaacca |
44283637 |
T |
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| Q |
130 |
aaattctaagatggtatcaaagcttgtcgnnnnnnnnnnnggaaaattcgaactcaatgcattcctttgataagtaaacagtgaaaactcctaacatatt |
229 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283638 |
aaattctaagatggtatcaaagcttgtcgttttttttt--ggaaaattagaactcaatgcattcctttgataagtaaacagtgaaaactcctaacatatt |
44283735 |
T |
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| Q |
230 |
tgaannnnnnngactcaaactacacaatttatggcagacgggtgacaattaacaccatttttcaactatgattcaggattttggttacctttatgatcca |
329 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283736 |
tgaatttttttgactcaaactacacaatttatggcagacgggtgacaattaacaccatttttcaactatgattcaggattttggttacctttatgatcca |
44283835 |
T |
|
| Q |
330 |
aacaatgagacagctggagcatttgtgccagcacaaatactctatgatgcattccatggaagatatcacaattccgctggagcaatagttctcctattta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283836 |
aacaatgagacagctggagcatttgtgccagcacaaatactctatgatgcattccatggaagatatcacaattccgctggagcaatagttctcctattta |
44283935 |
T |
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| Q |
430 |
tcatttg |
436 |
Q |
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| T |
44283936 |
tcatttg |
44283942 |
T |
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