View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0702_low_6 (Length: 378)
Name: NF0702_low_6
Description: NF0702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0702_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 95 - 373
Target Start/End: Original strand, 45369834 - 45370112
Alignment:
| Q |
95 |
aaaatgtattggtaggtatttgggtgacactaacttagctcaattaattcttaacacttttgctgtagcaatggtccttgtaacacaactgttcttttga |
194 |
Q |
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| T |
45369834 |
aaaatgtattggtaggtatttgggtgacactaacttagctcaattaattcttaacacttttgctgtagcaatggtccttgtaacacaactgttcttttga |
45369933 |
T |
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| Q |
195 |
ttttaaaatgaacggtccagtgacaaatatgtatgcccaactgtgtccattgaatctccacaataactaagctacatgttcctccagattccctttcacg |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45369934 |
ttttaaaatgaacggtccagtgacaaatatgtatgcccaactgtgtccactgaatctccacaataactaagctacatgttcctccagattccctttcacg |
45370033 |
T |
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| Q |
295 |
tgctcttgttgttcccttgattgctaccttttgnnnnnnnncacctaactttcaattttcacttctgttctcacgctct |
373 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45370034 |
tgctcttgttgttcccttgattgctaccttttgttttttttcacctaactttcaattttcacttctgttctcacgctct |
45370112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 95 - 373
Target Start/End: Original strand, 45386357 - 45386635
Alignment:
| Q |
95 |
aaaatgtattggtaggtatttgggtgacactaacttagctcaattaattcttaacacttttgctgtagcaatggtccttgtaacacaactgttcttttga |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45386357 |
aaaatgtattggtaggtatttgggtgacactaacttagctcaattaattcttaacactttttctgtagcaatggtccttgtaacacaactgttcttttga |
45386456 |
T |
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| Q |
195 |
ttttaaaatgaacggtccagtgacaaatatgtatgcccaactgtgtccattgaatctccacaataactaagctacatgttcctccagattccctttcacg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45386457 |
ttttaaaatgaacggtccagtgacaaatatgtatgcccaactgtgtccattgaatctccacaataactaagctacatgttcctccagattccctttcacg |
45386556 |
T |
|
| Q |
295 |
tgctcttgttgttcccttgattgctaccttttgnnnnnnnncacctaactttcaattttcacttctgttctcacgctct |
373 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45386557 |
tgctcttgttgttcccttgattgctaccttttgttttttttcacctaactttcaattttcacttctgttctcacgctct |
45386635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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