View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0705_high_2 (Length: 522)

Name: NF0705_high_2
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0705_high_2
NF0705_high_2
[»] chr3 (7 HSPs)
chr3 (11-483)||(51468376-51468874)
chr3 (16-71)||(51483288-51483343)
chr3 (236-278)||(43202737-43202779)
chr3 (374-413)||(28592301-28592340)
chr3 (130-161)||(51458188-51458219)
chr3 (130-167)||(51483397-51483434)
chr3 (16-72)||(51458067-51458123)
[»] chr8 (2 HSPs)
chr8 (330-483)||(14753493-14753643)
chr8 (211-287)||(14753354-14753430)
[»] chr1 (1 HSPs)
chr1 (199-291)||(43972483-43972575)
[»] chr4 (1 HSPs)
chr4 (16-72)||(48424797-48424853)
[»] chr7 (2 HSPs)
chr7 (236-278)||(48718123-48718165)
chr7 (380-439)||(48717948-48718005)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 51468376 - 51468874
Alignment:
Q  11 catagggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgttggtgtggatcgatcgatacaaattgtttcggatacgtga 110  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51468376 cataaggagagtggaaatcaagaggaacgaatgctttttggagtaagccattttttttgttggtgtggatcgatcgatacaaattgtttcggatacgtga 51468475  T
Q  111 ggtaggtatctagcactaaagcacattttgttgactcttctcttgcttgttcaataatgttgaaaatatatagtaaatgagttaggatcc---------- 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||              
T  51468476 ggtaggtatctagcactaaagcacattttgttgactcttctcttgcttgttcaataatgttgaaaatatacagtaaatgagttaggatccgttgtgttga 51468575  T
Q  201 ----aaatcctaaccatctaactttctaatctaatggccaacaatcaatgacataataactcttacatggactctcctcacagtcac------------a 284  Q
        ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||            |    
T  51468576 caccaaatcctaaccatctaactttttaatctaatggccaacaatcaatgacataataactcctacatgaactctcctcacactcacactcacactcaca 51468675  T
Q  285 ctcgtgttctaggattttcttttcaattgctattgtccattttgccgaaatcaacaactttgttccatagaaattttaaaaccttgtgggaatgctaatt 384  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51468676 ctcgtgttctaggattttcttttcaatcgctattgtccattctgccgaaatcaacagctttgttccatagaaattttaaaaccttgtgggaatgctaatt 51468775  T
Q  385 catacttttccatcttctttataccaataatctgcagtaaccattattgatttgaaacatttgtgttaaaagggggaaagctaatcatatcaataaaaa 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  51468776 catacttttccatcttctttataccaataatctgcagtaaccattattgatttgaaacatttgtatcaaaagggggaaagctaatcatatcaataaaaa 51468874  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 51483288 - 51483343
Alignment:
Q  16 ggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgtt 71  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  51483288 ggagagtggaaatcaagaggaatgaatgctttttggagtaagccattttctttgtt 51483343  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 43202779 - 43202737
Alignment:
Q  236 aacaatcaatgacataataactcttacatggactctcctcaca 278  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  43202779 aacaattaatgacataataactcctacatggactctcctcaca 43202737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 413
Target Start/End: Original strand, 28592301 - 28592340
Alignment:
Q  374 gaatgctaattcatacttttccatcttctttataccaata 413  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  28592301 gaattctaattcatacttttccaccttctttataccaata 28592340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 51458188 - 51458219
Alignment:
Q  130 agcacattttgttgactcttctcttgcttgtt 161  Q
    ||||||||||||||||||||||||||||||||    
T  51458188 agcacattttgttgactcttctcttgcttgtt 51458219  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 51483397 - 51483434
Alignment:
Q  130 agcacattttgttgactcttctcttgcttgttcaataa 167  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  51483397 agcacattttgttgactcttctcttacttgtttaataa 51483434  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 51458067 - 51458123
Alignment:
Q  16 ggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgttg 72  Q
    ||||||| |||||||||||||| ||| | ||||| ||||| |||||||||| |||||    
T  51458067 ggagagtagaaatcaagaggaatgaaggtttttttgagtaggccattttctgtgttg 51458123  T

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Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 330 - 483
Target Start/End: Original strand, 14753493 - 14753643
Alignment:
Q  330 cgaaatcaacaactttgttccatagaaattttaaaaccttgtgggaatgctaattcatacttttccatcttctttataccaataatctgcagtaaccatt 429  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||   |||||| |||||| |||    
T  14753493 cgaaatcaacagctttgttccatagaaattttaaaaccttgtgggaattctaattcatacttttcattcttctttatacc---aatctgtagtaacaatt 14753589  T
Q  430 attgatttgaaacatttgtgttaaaagggggaaagctaatcatatcaataaaaa 483  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  14753590 attgatttgaaacatttgtgtcaaaagggggaaagctaatcatatcaattaaaa 14753643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 14753354 - 14753430
Alignment:
Q  211 catctaactttct-aatctaatggccaacaatcaatgacataataactcttacatggactctcctcacagtcacactc 287  Q
    ||||||||||| | |||||||||  ||| |||||||||||||||||||| ||  ||||||||||||||| | ||||||    
T  14753354 catctaacttttttaatctaatgaacaataatcaatgacataataactc-taggtggactctcctcacacttacactc 14753430  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 43972575 - 43972483
Alignment:
Q  199 ccaaatcctaaccatctaactttctaatctaatggccaacaatcaatgacataataactcttacatggactctcctcacagtcacactcgtgt 291  Q
    |||||||  |||| ||||||||| ||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||  ||||||||||||    
T  43972575 ccaaatctcaaccgtctaactttttaatctagtggccaacaatcaattacataataactaatacatggactctcctcaccctcacactcgtgt 43972483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 48424797 - 48424853
Alignment:
Q  16 ggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgttg 72  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  48424797 ggagagtggaaatcaagaggaatgaatgctttttggagtaagccattttctttgttg 48424853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 48718165 - 48718123
Alignment:
Q  236 aacaatcaatgacataataactcttacatggactctcctcaca 278  Q
    |||||| |||||||||||||||| ||||||||||||| |||||    
T  48718165 aacaattaatgacataataactcctacatggactctcttcaca 48718123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 48718005 - 48717948
Alignment:
Q  380 taattcatacttttccatcttctttataccaataatctgcagtaaccattattgatttga 439  Q
    ||||||||||||||||| ||||||||||| |||  | |||||| ||||| ||||||||||    
T  48718005 taattcatacttttccaccttctttatactaat--tatgcagttaccatgattgatttga 48717948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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