View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0705_high_3 (Length: 255)
Name: NF0705_high_3
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0705_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 8829119 - 8829346
Alignment:
| Q |
28 |
cagagaagagtgaaggagaaacaaagttcctcttatgaactccttaatacatcaacaacaacatcattggagtctttactgcatggaatggacaattcaa |
127 |
Q |
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| T |
8829119 |
cagagaagagtgaaggagaaacaaagttcctcttatgaactccttaatacatcaacaacaacatcattggagtctttactgcatggaatggacaattcaa |
8829218 |
T |
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| Q |
128 |
atcactctgacttaatcagtgagattgaggaaggaagttcctcaggaataaaagatatttgtcattctaactttgatgatgtgtcaatgattcaaagcaa |
227 |
Q |
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| T |
8829219 |
atcactctgacttaatcagtgagattgaggaaggaagttcctcaggaataaaagatatttgtcattctaactttgatgatgtgtcaatgattcaaagcaa |
8829318 |
T |
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| Q |
228 |
tgcaaaaattccaagttatgatgaagat |
255 |
Q |
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| T |
8829319 |
tgcaaaaattccaagttatgatgaagat |
8829346 |
T |
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