View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0705_low_10 (Length: 254)
Name: NF0705_low_10
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0705_low_10 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 24986801 - 24987022
Alignment:
| Q |
29 |
atcaccaatatacaaggacgaatattaacaaaaatatgacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcc |
128 |
Q |
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| T |
24986801 |
atcaccaatatacaaggaggaatattaacaaaaataagacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcc |
24986900 |
T |
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| Q |
129 |
tttatgattccaatatcttcctaaaacacatagatcgagcactctatcatgactctaaatatatgttacatttgtattttttattcctctgcaaaactac |
228 |
Q |
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| T |
24986901 |
tttatgattccaatatcttcctgaaatacata----gagtagcctatcatgactctaaatatatgttacatttgtattttatatacttctgcaaaactac |
24986996 |
T |
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| Q |
229 |
ataccttgtaccgatgatatgcgtcg |
254 |
Q |
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| T |
24986997 |
ataccttgtaccgatgatatgcgtcg |
24987022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 25000339 - 25000143
Alignment:
| Q |
29 |
atcaccaatatacaaggacgaatattaacaaaaatatgacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcc |
128 |
Q |
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| T |
25000339 |
atcaccaatatacaaggacgaatattaacaaaaatatgacttacttggtagcactctagaccaagaaattgaaaatctataagcatccatattcaaatcc |
25000240 |
T |
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| Q |
129 |
tttatgattccaatatcttcctaaaacacatagatcgagcactctatcatgactctaaatatatgttacatttgtattttttattcctctgcaaaactac |
228 |
Q |
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| T |
25000239 |
ttcatgattccaatatcttcctaaaatacata----aagcagtctttcaggactctaagtataagttacatttgcattttatatacctctgcaaaactac |
25000144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 25047217 - 25047342
Alignment:
| Q |
29 |
atcaccaatatacaaggacg-aatattaacaaaaatatgacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatc |
127 |
Q |
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|||| |||||| |||||| | ||||||||||||| || ||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||| || |
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| T |
25047217 |
atcagcaatatccaaggaagtaatattaacaaaa-tacgacttacttggtaagactctagaccaagaaatggagaatctataagcatccatattcatata |
25047315 |
T |
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| Q |
128 |
ctttatgattccaatatcttcctaaaa |
154 |
Q |
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| T |
25047316 |
cttcatgattccaacatcttcctaaaa |
25047342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 25180925 - 25181010
Alignment:
| Q |
65 |
tgacttacttggtagcactctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct |
150 |
Q |
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|||||||||||| || | ||||||||||| |||||||||||||| ||||||| |||| |||||| ||||| |||| |||||||| |
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| T |
25180925 |
tgacttacttgggagtattctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct |
25181010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 25169155 - 25169222
Alignment:
| Q |
83 |
tctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct |
150 |
Q |
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| T |
25169155 |
tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct |
25169222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 25252099 - 25252032
Alignment:
| Q |
83 |
tctagaccaagcaatggaaaatctgtaagcatccatattcaaatcctttatgattccaatatcttcct |
150 |
Q |
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||||||||||| |||||||||||||| ||||||| |||| |||||| ||||| |||| |||||||| |
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| T |
25252099 |
tctagaccaagatatggaaaatctgtatgcatccaagttcatatccttcatgataccaacatcttcct |
25252032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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