View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0705_low_11 (Length: 253)
Name: NF0705_low_11
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0705_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 43082602 - 43082760
Alignment:
| Q |
9 |
agcacagacacaatgtagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtca |
108 |
Q |
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| T |
43082602 |
agcacagacacaatgtagtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtca |
43082701 |
T |
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| Q |
109 |
atccgttaacaaatggctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
167 |
Q |
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| T |
43082702 |
atccgttaacaaaaggctatacctcgatctgtcgcaaacagacaggcagcaactctaat |
43082760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 43082759 - 43082828
Alignment:
| Q |
188 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgta----atatagttccaatttcaatcattt |
253 |
Q |
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| T |
43082759 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaatatatatagttccattttcaatcattt |
43082828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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