View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0705_low_15 (Length: 223)
Name: NF0705_low_15
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0705_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 51468374 - 51468565
Alignment:
| Q |
1 |
atcatagggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgttggtgtggatcgatcgatacaaattgtttcggatacgt |
100 |
Q |
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| T |
51468374 |
atcataaggagagtggaaatcaagaggaacgaatgctttttggagtaagccattttttttgttggtgtggatcgatcgatacaaattgtttcggatacgt |
51468473 |
T |
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| Q |
101 |
gaggtaggtatctagcactaaagcacattttgttgactcttctcttgcttgttcaataatgttgaaaatatatagtaaatgagttaggatcc |
192 |
Q |
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| T |
51468474 |
gaggtaggtatctagcactaaagcacattttgttgactcttctcttgcttgttcaataatgttgaaaatatacagtaaatgagttaggatcc |
51468565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 51483288 - 51483343
Alignment:
| Q |
8 |
ggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgtt |
63 |
Q |
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| T |
51483288 |
ggagagtggaaatcaagaggaatgaatgctttttggagtaagccattttctttgtt |
51483343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 51458188 - 51458219
Alignment:
| Q |
122 |
agcacattttgttgactcttctcttgcttgtt |
153 |
Q |
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| T |
51458188 |
agcacattttgttgactcttctcttgcttgtt |
51458219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 51483397 - 51483434
Alignment:
| Q |
122 |
agcacattttgttgactcttctcttgcttgttcaataa |
159 |
Q |
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| T |
51483397 |
agcacattttgttgactcttctcttacttgtttaataa |
51483434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 51458067 - 51458123
Alignment:
| Q |
8 |
ggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgttg |
64 |
Q |
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| T |
51458067 |
ggagagtagaaatcaagaggaatgaaggtttttttgagtaggccattttctgtgttg |
51458123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 51468578 - 51468610
Alignment:
| Q |
191 |
ccaaatcctaaccatctaactttctaatctaat |
223 |
Q |
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| T |
51468578 |
ccaaatcctaaccatctaactttttaatctaat |
51468610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 48424797 - 48424853
Alignment:
| Q |
8 |
ggagagtggaaatcaagaggaacgaatggtttttggagtaagccattttctttgttg |
64 |
Q |
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| T |
48424797 |
ggagagtggaaatcaagaggaatgaatgctttttggagtaagccattttctttgttg |
48424853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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