View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0705_low_3 (Length: 420)
Name: NF0705_low_3
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0705_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 9546250 - 9546100
Alignment:
| Q |
107 |
ctgaaaccgttgaagaaggtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcaca |
206 |
Q |
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| T |
9546250 |
ctgaaaccgttgaagaaggtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcaca |
9546151 |
T |
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| Q |
207 |
agaaaaataaacaagttgcagaaagtggtggtgattattcaatttcacaac |
257 |
Q |
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| T |
9546150 |
agaaaaataaacaagttgcagaaagtggtggtgattattcaatttcacaac |
9546100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 4996576 - 4996614
Alignment:
| Q |
360 |
gttcatcattgattgcacacttttctccataataatccc |
398 |
Q |
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| T |
4996576 |
gttcatcattgattgcacacttttctccataataatccc |
4996614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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