View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0705_low_8 (Length: 271)
Name: NF0705_low_8
Description: NF0705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0705_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42769830 - 42770052
Alignment:
| Q |
1 |
tttgtggatttaccagcatctgccaaatagcctttgtaaaaatatcttgctccaattagcttcctatatatcatgaacaaataatataataatggagtta |
100 |
Q |
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| T |
42769830 |
tttgtggatttaccagcatctgccaaatagcctttgtaaaaatatcttgctccaattagcttcctatatatcatgaacaaataatataaaaatggagtta |
42769929 |
T |
|
| Q |
101 |
gagtgaaaaattaggtattatgtgtaaactatatatgtatcagaagcataacattgtgttacttttaacaaaaagatgctcattagataaatacgagtat |
200 |
Q |
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| T |
42769930 |
gagtgaaaaattaggtattatgtgtaaactatatatgt----------------------acttttaacaaaaagatgctcattagataaatacgagtat |
42770007 |
T |
|
| Q |
201 |
ataacaagattaacctgttgcatttaaatttatcagtataatcta |
245 |
Q |
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| T |
42770008 |
ataacaagattaacctgttgcatttaaatttatcagtattatcta |
42770052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 42734528 - 42734482
Alignment:
| Q |
20 |
ctgccaaatagcctttgtaaaaatatcttgctccaattagcttccta |
66 |
Q |
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| T |
42734528 |
ctgccatatagcctttgtaaaaatatcttgcgccaataagcttccta |
42734482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 42743985 - 42744031
Alignment:
| Q |
20 |
ctgccaaatagcctttgtaaaaatatcttgctccaattagcttccta |
66 |
Q |
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|||||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
42743985 |
ctgccagatagcctttgttaaaatatcttgctccaataagcttccta |
42744031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 42753344 - 42753390
Alignment:
| Q |
20 |
ctgccaaatagcctttgtaaaaatatcttgctccaattagcttccta |
66 |
Q |
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|||||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
42753344 |
ctgccagatagcctttgttaaaatatcttgctccaataagcttccta |
42753390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 42717371 - 42717408
Alignment:
| Q |
31 |
cctttgtaaaaatatcttgctccaattagcttcctata |
68 |
Q |
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| T |
42717371 |
cctttgtaaaaatatcttgctccaataagcttcctata |
42717408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 23040488 - 23040443
Alignment:
| Q |
21 |
tgccaaatagcctttgtaaaaatatcttgctccaattagcttccta |
66 |
Q |
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||||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
23040488 |
tgccagatagcctttgttaaaatatcttgctccaataagcttccta |
23040443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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