View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0706_high_2 (Length: 430)
Name: NF0706_high_2
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0706_high_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 48 - 430
Target Start/End: Complemental strand, 32101971 - 32101601
Alignment:
| Q |
48 |
tcatatatgtcttgtttaa-caacgtttttcacgttcagattgcattttggcttcttataatgaaaataatctcctatatagatgtagctagttttggat |
146 |
Q |
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| T |
32101971 |
tcatatatgtcttgtctaaacaacgtttttcatgttcagattgcattttggcttcttataatgaaaataatctcctatgtaggtgtagctagttttggtt |
32101872 |
T |
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| Q |
147 |
ttgttnnnnnnnnnnnnnngcctctattaatgtatatttttattccattgttaaaaaagtaaagcctccataatcaagagagtctttagatacacgtacg |
246 |
Q |
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| T |
32101871 |
ttgtttatatata------gcctctattaatgtatctttttattccattgttaaaaaagtaaagcctccataatcaaaagagtctttacatacacgcacg |
32101778 |
T |
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| Q |
247 |
tgaatactcttatatcttaagttttgatgtatttagtctaaattttaaagtaaatataccaatctttcgttacgctatttgtttattattcaatgtaagc |
346 |
Q |
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| T |
32101777 |
tcaatactcttatatcttaagttttgatgtatttagtctgaa-------gtaaatataccaatctttctttacactatttgtttattattcaatgtaagc |
32101685 |
T |
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| Q |
347 |
caccaaatcatgggactatataattgcaatataagccgaaagaaaagagaaactactacggctatggaagcaattcttaatgtc |
430 |
Q |
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| T |
32101684 |
caccaaatcatgggactatataattgcaatataagctgaaagaaaagagaaactactacagctatggaagcaatttttaatgtc |
32101601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 32103271 - 32103188
Alignment:
| Q |
347 |
caccaaatcatgggactatataattgcaatataagccgaaagaaaagagaaactactacggctatggaagcaattcttaatgtc |
430 |
Q |
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| T |
32103271 |
caccaaatcatgggactatataattacaatataagctgaaagaaacgagaaactacaacggctatggaaacaattctcaatgtc |
32103188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 32103505 - 32103366
Alignment:
| Q |
66 |
acaacgtttttcacgttcagattgcattttggcttcttataatgaaaataatctcctatatagatgtagctagttttggatttgttnnnnnnnnnnnnnn |
165 |
Q |
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||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||||| |
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| T |
32103505 |
acaacgtttttcatgttcatattgaattttggcttcttataatgaaaaaaatctcctatgttggtgtagctagttttggatttgtt----------tata |
32103416 |
T |
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| Q |
166 |
gcctctattaatgtata-tttttattccattgttaaaaaagtaaagcctc |
214 |
Q |
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| T |
32103415 |
gcctctgttaatgtatattttttattccattgttgaaaaagtaaagcctc |
32103366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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