View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0706_high_6 (Length: 251)
Name: NF0706_high_6
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0706_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31480804 - 31480565
Alignment:
| Q |
1 |
ttgttgctatttttgtaagcattgcatttaggccttgacttttatcccacaaaattcattcaaatttactttaaaatatccctacggtccttgatgaaat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31480804 |
ttgttgctgtttttgtaagcattgcatttaggccttgactttcatcccacaaaactcattcaaatttactttaaaatatccctacggtccttgataaaat |
31480705 |
T |
|
| Q |
101 |
tttcctatttggtcgggacttttatcatcgagtgattggtttggtttcacaatacaaaccaatataattggttcatttttcccatattaggatccaaacc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31480704 |
tttccaatttggtcgggacttttatcatcgagtgattggtttggtttgacaatacaaaccaatataattggttcatttttcccatattaggatccaaact |
31480605 |
T |
|
| Q |
201 |
aatcaaatccaacctctattggtccgagcatcagtttcat |
240 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
31480604 |
aatcaaatccgacctctattggtccgagcatcagtttcat |
31480565 |
T |
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