View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0706_low_1 (Length: 682)

Name: NF0706_low_1
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0706_low_1
NF0706_low_1
[»] chr8 (5 HSPs)
chr8 (206-674)||(42080217-42080685)
chr8 (1-186)||(42080713-42080898)
chr8 (360-507)||(20526245-20526393)
chr8 (281-427)||(37590031-37590177)
chr8 (364-406)||(23558673-23558715)
[»] scaffold0019 (1 HSPs)
scaffold0019 (272-555)||(73323-73607)
[»] chr5 (9 HSPs)
chr5 (280-675)||(13948782-13949178)
chr5 (323-672)||(40299656-40300006)
chr5 (410-672)||(27393101-27393364)
chr5 (459-674)||(3051098-3051317)
chr5 (276-423)||(3050946-3051093)
chr5 (276-439)||(29754943-29755105)
chr5 (360-445)||(26683459-26683544)
chr5 (332-428)||(2157822-2157918)
chr5 (328-428)||(19237665-19237765)
[»] chr6 (3 HSPs)
chr6 (291-672)||(17391994-17392374)
chr6 (263-427)||(17397770-17397929)
chr6 (366-428)||(16416600-16416662)
[»] chr1 (7 HSPs)
chr1 (272-496)||(34696088-34696313)
chr1 (360-427)||(2002610-2002677)
chr1 (368-418)||(30981235-30981285)
chr1 (332-428)||(4614889-4614985)
chr1 (281-420)||(24065220-24065359)
chr1 (357-428)||(41117188-41117259)
chr1 (332-428)||(13288086-13288182)
[»] scaffold0013 (2 HSPs)
scaffold0013 (453-674)||(43870-44091)
scaffold0013 (356-430)||(42499-42573)
[»] chr2 (8 HSPs)
chr2 (584-674)||(14995107-14995197)
chr2 (375-428)||(14995196-14995249)
chr2 (375-493)||(10973636-10973755)
chr2 (313-428)||(11818469-11818584)
chr2 (409-549)||(2973541-2973682)
chr2 (276-439)||(14231011-14231177)
chr2 (366-427)||(11502322-11502383)
chr2 (308-428)||(36641358-36641478)
[»] chr7 (5 HSPs)
chr7 (332-428)||(48100785-48100881)
chr7 (336-428)||(15633228-15633320)
chr7 (264-428)||(30622473-30622637)
chr7 (281-427)||(32480215-32480361)
chr7 (358-427)||(26016528-26016597)
[»] chr3 (6 HSPs)
chr3 (296-436)||(45680113-45680253)
chr3 (332-428)||(18357106-18357203)
chr3 (366-427)||(53437536-53437597)
chr3 (351-428)||(49499409-49499486)
chr3 (366-427)||(53394835-53394896)
chr3 (332-428)||(16739475-16739571)
[»] scaffold1964 (1 HSPs)
scaffold1964 (369-549)||(989-1170)
[»] chr4 (5 HSPs)
chr4 (296-439)||(54027711-54027854)
chr4 (276-540)||(12355110-12355375)
chr4 (522-579)||(49746142-49746199)
chr4 (332-428)||(37061094-37061190)
chr4 (280-427)||(18878174-18878321)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 206 - 674
Target Start/End: Complemental strand, 42080685 - 42080217
Alignment:
Q  206 gattatttggacaatcaggcattctcggagtttaaannnnnnnagttaggattaaacatttttatgaaataaaggtgcttattgcatattattaataatc 305  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080685 gattatttggacaatcaggcattctcggagtttaaatttttttagttaggattaaacatttttatgaaataaaggtgcttattgcatattattaataatc 42080586  T
Q  306 aaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcc 405  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  42080585 aaagttccaatataatttggtgtatgaaaataaacaacgggattggctacaaatgtggtctctcctgcaagagtatgagcaatcacatttgcttgtctcc 42080486  T
Q  406 tagcaaactccacccgagagttgttgaacttggaagagagaagaaccgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  42080485 tagcaaactccacccgagagttgttgaacttggaagagagaagaaccgggaagccattataatattacctaattcagagatgtcttccctacctgagtaa 42080386  T
Q  506 atgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgc 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080385 atgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgc 42080286  T
Q  606 caatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080285 caatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc 42080217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 42080898 - 42080713
Alignment:
Q  1 tcgtctcgaaatctgattccattgagaatcgcgttatctaatacacgatttcgctgaaacgaattctatcgattcgaagaacggcaaagtaatttaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080898 tcgtctcgaaatctgattccattgagaatcgcgttatctaatacacgatttcgctgaaacgaattctatcgattcgaagaacggcaaagtaatttaggaa 42080799  T
Q  101 ccaaaattgtttatcgttattcaatttgtgaaactggaagggttttgatgaaaccgaggcacggaaattcgaagaccaaaacaagc 186  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080798 ccaaaattgtttatagttattcaatttgtgaaactggaagggttttgatgaaaccgaggcacggaaattcgaagaccaaaacaagc 42080713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 360 - 507
Target Start/End: Original strand, 20526245 - 20526393
Alignment:
Q  360 gtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaag 458  Q
    |||| ||| ||||| ||||||||||| | |||||| ||||||| || | |||||||||||||||||||| | || ||| | ||||| || ||||||||||    
T  20526245 gtggcctcccctgcgagagtatgagccaccacattaacttgtcgccgaacaaactccacccgagagttggtaaatttgaacgagagcaaaaaccgggaag 20526344  T
Q  459 ccgtgataatattacctaattcagagatgtcttccctacctcagtaaat 507  Q
    |  ||||||| ||||| | |||||  |||||||||| |||  |||||||    
T  20526345 caatgataatgttaccgacttcagttatgtcttcccgacccgagtaaat 20526393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 427
Target Start/End: Original strand, 37590031 - 37590177
Alignment:
Q  281 tgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagta 380  Q
    ||||||| |||| | ||||||||| | | || ||||| |||| ||| ||| |||||||||  ||||| | |||| | |||||| ||| | |||||||| |    
T  37590031 tgcttatagcatttcattaataataagagtttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagca 37590130  T
Q  381 tgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    ||||||| ||| ||  |||||| |||| |||||||||||| ||||||    
T  37590131 tgagcaaccacgttggcttgtcgcctaacaaactccaccctagagtt 37590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 23558715 - 23558673
Alignment:
Q  364 tctctcctgcaagagtatgagcaatcacatttacttgtctcct 406  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  23558715 tctctcctgcaagagtatgaacaaccacatttgcttgtctcct 23558673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 272 - 555
Target Start/End: Original strand, 73323 - 73607
Alignment:
Q  272 aaataaaggtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcct 371  Q
    ||||||||||| ||||  ||||| ||||||||||||| || ||||| |||| ||| ||| ||| |||||||||| | | |||| ||||||||||||||||    
T  73323 aaataaaggtgtttataacatatcattaataatcaaagtttcaatacaattgggtatataaaagtaaacaacgggactagctagaaacgtggtctctcct 73422  T
Q  372 gcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaa-ccgggaagccgtgataatat 470  Q
    || || |||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  73423 gcgagtgtatcagcaaccacatttgcttgtctcttagcaaactccacccgagagttgttgaacttggaagagagaagaacccgagaagccgtgataatat 73522  T
Q  471 tacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgag 555  Q
    | ||||||||||||||||||||||| |||  ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  73523 ttcctaattcagagatgtcttcccttcctgggtaaatggcatctttcgtggttttggaatcaacttcaaagttgatattgtcgag 73607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 2e-82; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 280 - 675
Target Start/End: Original strand, 13948782 - 13949178
Alignment:
Q  280 gtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagt 379  Q
    |||||||| |||||| | ||||||||||| || ||||| |||  ||| |||||||||||||||||||| | |||| |||||||  ||||| ||| |||||    
T  13948782 gtgcttatagcatatcaataataatcaaagtttcaatacaatagggtatatgaaaataaacaacggaactagctagaaacgtgacctctcatgcgagagt 13948881  T
Q  380 atgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaaccgg-gaagccgtgataatattacctaat 478  Q
    ||||| ||  |||||| ||||||||||| |||||| || || | |||| ||||||||||||||||||||||   | ||||| || |||| ||||||||||    
T  13948882 atgagaaactacatttgcttgtctcctaacaaacttcatccaatagttattgaacttggaagagagaagaatttgagaagcagt-ataacattacctaat 13948980  T
Q  479 tcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgca 578  Q
    ||| |||||| |||||||| | |||||| | ||  |||  |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  13948981 tcaaagatgttttccctac-tgagtaaacgacatattttatggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgca 13949079  T
Q  579 aggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaa--cacaccaccttcatctca 675  Q
    |||| |||||||||||||||| |||||||||||||||  |||||| |||||||||| |||||||| |||||||| ||||  || |||||||||||||||    
T  13949080 aggcttgatagagacccaaagtctcgccaatatcaaccgagtaaaaaccaacaaagttgattgttctggccagtgcaaacgcataccaccttcatctca 13949178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 323 - 672
Target Start/End: Complemental strand, 40300006 - 40299656
Alignment:
Q  323 tggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccga 422  Q
    |||| |||||||||||||||||||| | || | ||| |||| |||| || | ||||||||||||| ||| ||| |||||| |||| ||||||||||||||    
T  40300006 tggtatatgaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgtcgcctaacaaactccacccga 40299907  T
Q  423 gagttgttgaacttggaagagagaagaaccg-ggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtgg 521  Q
    ||||||||||||||||| || || | |||   |||||  ||| | ||||| ||||||||| | ||||||||| |  || |||||||  || || | |||     
T  40299906 gagttgttgaacttggaggaaagcataacttcggaagttgtggtgatattgcctaattcataaatgtcttccttgtctgagtaaatcgcatctcttgtgc 40299807  T
Q  522 ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagta 621  Q
    |||||||||||| ||||||  | |||||||||||||||||||| || ||||||||| ||||||||||||||||||| || |||||||||||||   ||||    
T  40299806 ttttggaatcaatttcaaaaccaatattgtcgagttgcatgtcactcacccattgctaggcgtgatagagacccaaggcttcgccaatatcaattgagta 40299707  T
Q  622 aacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatc 672  Q
    | |  |||||||| ||||| |||||||||| ||||||||||||||||||||    
T  40299706 agcgacaacaaagttgattattttggccagaacaaacacaccaccttcatc 40299656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 410 - 672
Target Start/End: Original strand, 27393101 - 27393364
Alignment:
Q  410 aaactccacccgagagttgttgaacttggaagagagaagaac-cgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatg 508  Q
    |||||||||||||||||||||||||||| | || || | ||| |  ||||| ||||| ||||| ||||||||||| ||||||||||| |||  ||||||     
T  27393101 aaactccacccgagagttgttgaacttgaaggaaagtaaaactcaagaagctgtgatgatattgcctaattcagaaatgtcttccctgcctgcgtaaatt 27393200  T
Q  509 ccaact-ttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgcca 607  Q
     || || || ||| ||||| ||||||||||||| |||||||||||  || |||||||  | |||||||||||| |||||||||||||||| || ||||||    
T  27393201 acatctctttgtgcttttgaaatcaacttcaaaatcgatattgtctggt-gcatgtcaatcacccattgcaagacgtgatagagacccaaggcttcgcca 27393299  T
Q  608 atatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatc 672  Q
    ||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27393300 atatcaaccgggtaaacaccaacaaagctgattgttttggccaaaacaaacacaccaccttcatc 27393364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 459 - 674
Target Start/End: Original strand, 3051098 - 3051317
Alignment:
Q  459 ccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttg 558  Q
    ||||||||||| ||||||| ||||| |||| ||| |||||| ||||||||    ||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  3051098 ccgtgataatagtacctaaatcagatatgttttctctacctgagtaaatggtctctttcgtggttttggaatcaatttcaaagtcgatattatcgggttg 3051197  T
Q  559 catgtcgctaacccattgcaaggcgtgata----gagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtac 654  Q
    |||||| ||  |||||| ||||||||||||    |||||||||||||||| |||||||||   ||||||||||||||||| ||||||||||||| || ||    
T  3051198 catgtcactcgcccattacaaggcgtgatagatagagacccaaagcctcgtcaatatcaatcgagtaaacaccaacaaagttgattgttttggctagaac 3051297  T
Q  655 aaacacaccaccttcatctc 674  Q
    |||| |||| ||||||||||    
T  3051298 aaacccaccgccttcatctc 3051317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 276 - 423
Target Start/End: Original strand, 3050946 - 3051093
Alignment:
Q  276 aaaggtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaa 375  Q
    ||||||| |||| |||||| |||||| |||||| || ||||| |||  |||  |||||||||||| |||| ||| ||||  ||| || |||||||| | |    
T  3050946 aaaggtgtttatagcatatcattaatgatcaaagtttcaatacaataaggtagatgaaaataaacgacgggattagctaggaacatgatctctcctacga 3051045  T
Q  376 gagtatgagcaatcacatttacttgtctcctagcaaactccacccgag 423  Q
    |||||||||||| |||||||  ||||||||||||||| ||||||||||    
T  3051046 gagtatgagcaaccacatttgtttgtctcctagcaaaatccacccgag 3051093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 439
Target Start/End: Original strand, 29754943 - 29755105
Alignment:
Q  276 aaaggtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaa 375  Q
    |||||||||||| |||| | ||||||||||||| || ||||| |||| ||| |||||||||| | | ||| | | || | ||| ||||  |||  |||||    
T  29754943 aaaggtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggcttct-ttgcaa 29755041  T
Q  376 gagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttgga 439  Q
    |||| ||||| | ||||||  |||||| |||| |||||||||||| ||||||| | ||||||||    
T  29755042 gagtgtgagccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttgga 29755105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 445
Target Start/End: Complemental strand, 26683544 - 26683459
Alignment:
Q  360 gtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag 445  Q
    |||| ||| ||||||||||||||||| | |||||| ||||||| |  | ||||||||||||||||||||   |||||||| |||||    
T  26683544 gtggcctcccctgcaagagtatgagccaccacattaacttgtcgcggaacaaactccacccgagagttggaaaacttggacgagag 26683459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 2157822 - 2157918
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||||| | | ||||  |||||||  |||| |||||||| || ||||||| | ||  |||||| |||| ||||||||||||||||||||    
T  2157822 aaaataaacaacgggactagctagtaacgtggcttctcttgcaagagcataagcaatctcgttggcttgtcgcctaacaaactccacccgagagttg 2157918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 428
Target Start/End: Complemental strand, 19237765 - 19237665
Alignment:
Q  328 tatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    ||||||||||||||  |||||| ||||  | ||||  ||||| |||||||  |||||||| | ||||| |||||| ||||  ||||||||||| ||||||    
T  19237765 tatgaaaataaacagtggaattagctagtagcgtgacctctcttgcaagaacatgagcaacctcatttgcttgtcgcctaataaactccaccctagagtt 19237666  T
Q  428 g 428  Q
    |    
T  19237665 g 19237665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 291 - 672
Target Start/End: Original strand, 17391994 - 17392374
Alignment:
Q  291 atattattaataatcaaaattccaatataatttggtgtatga-aaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatc 389  Q
    |||| ||||||||||||| || ||||| |||  ||| ||||  ||||||||||||| | | |  | |||||| | ||||||||| ||| ||||||||| |    
T  17391994 atatcattaataatcaaagtttcaatacaatagggtatatgggaaataaacaacgggactagaaaaaaacgtagcctctcctgcgagactatgagcaacc 17392093  T
Q  390 acatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaac-cgggaagccgtgataatattacctaattcagagatgt 488  Q
    |||||| ||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||||   |||||||  |||||     |||||||||||||||| |    
T  17392094 acatttgcttatctcctagaaaacttcacccgatagttgttgaacctggaagagagaagatttcgggaagttgtgatg----tacctaattcagagattt 17392189  T
Q  489 cttccctacctcagtaaatgccaacttt-cgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgat 587  Q
    ||||||||||| |||||| | |  |||| || | ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  17392190 cttccctacctgagtaaacgacctcttttcgggtttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcactcaaccattgcaaggcgtgat 17392289  T
Q  588 agagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatc 672  Q
    ||||||||||||| || |||||||||||  | |||||||||| ||||||||||||||||||||| | |||||| |||||||||||    
T  17392290 agagacccaaagcttcaccaatatcaaccgattaaacaccaataaagctgattgttttggccagaagaaacacgccaccttcatc 17392374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 263 - 427
Target Start/End: Original strand, 17397770 - 17397929
Alignment:
Q  263 atttttatgaaataaaggtgcttattgcatat--tattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacg 360  Q
    |||||| | ||| |||||||||||| ||||||  |||||||||||||||||  |||| |||  ||| |||||||||||||||||||| | |||| |||||    
T  17397770 attttttttaaaaaaaggtgcttatagcatatcatattaataatcaaaattttaatacaataaggtatatgaaaataaacaacggaactagctagaaacg 17397869  T
Q  361 tggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    | ||||||| ||| ||| ||||       ||||||  || ||||||| |||||||||||||||||||    
T  17397870 tagtctctcttgcgagactatg-------acatttgtttttctcctaacaaactccacccgagagtt 17397929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 16416662 - 16416600
Alignment:
Q  366 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||| || |||||| | |||||||||||| |||| |||||| ||||| |||||||    
T  16416662 tctcctgcaagaatacgagcaacctcatttacttgtcgcctaacaaactacaccctagagttg 16416600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 272 - 496
Target Start/End: Original strand, 34696088 - 34696313
Alignment:
Q  272 aaataaaggtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcct 371  Q
    ||||||||||||||||  ||||| ||||||||||||| || ||||| |||  ||| |||||||||||||||||  | | |||| ||||||||||||||||    
T  34696088 aaataaaggtgcttatatcatatcattaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagctagaaacgtggtctctcct 34696187  T
Q  372 gcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaa-ccgggaagccgtgataatat 470  Q
     | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34696188 tcgagagtatgagcaaccacattttcttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaatccgggaagccgtgataatat 34696287  T
Q  471 tacctaattcagagatgtcttcccta 496  Q
    ||| ||||  ||||||||||||||||    
T  34696288 tacataataaagagatgtcttcccta 34696313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 2002610 - 2002677
Alignment:
Q  360 gtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    |||||||||| ||| ||||||||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  2002610 gtggtctctcatgcgagagtatgagcaaccacatttgcttgtctcctgacaaactccacccgagagtt 2002677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 30981285 - 30981235
Alignment:
Q  368 tcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccac 418  Q
    |||||| ||||||||||||| |||||||| |||||||||| ||||||||||    
T  30981285 tcctgcgagagtatgagcaaccacatttatttgtctcctaacaaactccac 30981235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 4614985 - 4614889
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    ||||| |||||||||| | | || ||||||||  ||| |||||||   |||||||| |||||||  ||||| ||||||||||||||||| |||||||    
T  4614985 aaaatcaacaacggaactagttagaaacgtggcttcttctgcaagcacatgagcaaccacatttgtttgtcgcctagcaaactccaccctagagttg 4614889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 420
Target Start/End: Complemental strand, 24065359 - 24065220
Alignment:
Q  281 tgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagta 380  Q
    ||||||| |||| | ||||||||| | || | ||||| |||  ||| | |||||||||||||||| | | ||||  |||||||  ||||||||||||  |    
T  24065359 tgcttatagcatttcattaataataagaagttcaatacaatcgggtatgtgaaaataaacaacgggactagctagtaacgtggcttctcctgcaagaaca 24065260  T
Q  381 tgagcaatcacatttacttgtctcctagcaaactccaccc 420  Q
    ||||||| | | ||| |||||| |||| ||||||||||||    
T  24065259 tgagcaacctcgtttgcttgtcgcctaacaaactccaccc 24065220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 41117259 - 41117188
Alignment:
Q  357 aacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||  |||| |||||||| |||||||| | ||||  |||||| |||| ||||||||||||||||||||    
T  41117259 aacgtggcttctcttgcaagagcatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttg 41117188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 13288182 - 13288086
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||||| | | |||| |||  |||  |||||||||||   |||||||| | |||||  ||||| ||||||||||||||||| |||||||    
T  13288182 aaaataaacaacgggactagctagaaatatggcttctcctgcaagcacatgagcaaccgcatttgtttgtcgcctagcaaactccaccctagagttg 13288086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 453 - 674
Target Start/End: Complemental strand, 44091 - 43870
Alignment:
Q  453 gggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtc 552  Q
    ||||||| ||||| ||| | |||||| |||| | ||||||||||| | |||||||  || || | ||| ||||| ||||||||||||| |||||||||||    
T  44091 gggaagctgtgatgataatgcctaatacagaaaagtcttccctacatgagtaaatcacatctcttgtgtttttgcaatcaacttcaaaatcgatattgtc 43992  T
Q  553 gagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagt 652  Q
    |||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||  |||||| ||||||||||| |      
T  43991 gagttgcatgtcactcatccattgcaaggcgtgatagagacccaaagcttcgccaatatcaatggagttaacaccataaaagcttattgttttggctaaa 43892  T
Q  653 acaaacacaccaccttcatctc 674  Q
    ||||||||||||| ||| ||||    
T  43891 acaaacacaccactttcgtctc 43870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 42499 - 42573
Alignment:
Q  356 aaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgtt 430  Q
    |||||||| ||||||| | ||||||||| ||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  42499 aaacgtggcctctcctacgagagtatgaacaaccacgtttgtttgtcgcctagcaaactccacccgagagttgtt 42573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 584 - 674
Target Start/End: Complemental strand, 14995197 - 14995107
Alignment:
Q  584 tgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc 674  Q
    |||||||| |||||||| || ||||||||||   | ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  14995197 tgatagaggcccaaagcttcaccaatatcaattgaataaacaccaacaaagatgattgttttgaccagtacaaacacaccaccctcatctc 14995107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 14995249 - 14995196
Alignment:
Q  375 agagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14995249 agagtatgagcaatcacatttccttgtctcctagcaaactccacccgagagttg 14995196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 493
Target Start/End: Original strand, 10973636 - 10973755
Alignment:
Q  375 agagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataatattac 473  Q
    ||||| ||||| | ||||||  |||||| || | |||||||||||||||||||| | |||||||| ||||| ||  |||||||||||||||| || ||||    
T  10973636 agagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagaccgggaagccgtgatgatgttac 10973735  T
Q  474 ctaattcagagatgtcttcc 493  Q
    | ||||| |  |||||||||    
T  10973736 caaattctgttatgtcttcc 10973755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 11818469 - 11818584
Alignment:
Q  313 caatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaa 412  Q
    |||||||||| ||| | |||||||||| ||||| | | ||||  |||||||  ||||||||||||  |||||||| | | ||| |||||| |||| ||||    
T  11818469 caatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaa 11818568  T
Q  413 ctccacccgagagttg 428  Q
    |||||||| |||||||    
T  11818569 ctccaccctagagttg 11818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 549
Target Start/End: Original strand, 2973541 - 2973682
Alignment:
Q  409 caaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaat 507  Q
    |||||||||||||||||||| | |||||||| ||||| ||  ||  |||||||||||| || || || |||||||  |||||||||| |||  ||||||     
T  2973541 caaactccacccgagagttggtaaacttggacgagagcaaagactaggaagccgtgatgatgttgccaaattcagttatgtcttcccgacccgagtaaag 2973640  T
Q  508 gccaactttcgtggttttggaatcaacttcaaagtcgatatt 549  Q
      || |||| ||||||||||| || |||||||| || |||||    
T  2973641 agcatcttttgtggttttggagtcgacttcaaaatcaatatt 2973682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 439
Target Start/End: Complemental strand, 14231177 - 14231011
Alignment:
Q  276 aaaggtgcttattgcat---attattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctg 372  Q
    |||||||||||| ||||   || ||||||||||||| || ||||| |||| ||| |||||||||| | ||||| | | || | ||| ||||  || | ||    
T  14231177 aaaggtgcttatagcatttcatcattaataatcaaagtttcaatacaattgggtatatgaaaatagataacgggactagcgagaaatgtggcttcccttg 14231078  T
Q  373 caagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttgga 439  Q
    ||||||| ||||| | ||||||  |||||| |||| |||||||||| | ||||||| | ||||||||    
T  14231077 caagagtgtgagccaccacattagcttgtcgcctaacaaactccactctagagttggtaaacttgga 14231011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 11502383 - 11502322
Alignment:
Q  366 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    |||| ||||||||||||||||| ||| ||  |||||| |||| |||||||||||| ||||||    
T  11502383 tctcttgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagtt 11502322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 308 - 428
Target Start/End: Complemental strand, 36641478 - 36641358
Alignment:
Q  308 aattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctccta 407  Q
    |||| |||||||||| ||| | | |||||||||||||| | | ||||  || ||||  |||  |||||||| |||||||| | | ||  |||||| ||||    
T  36641478 aatttcaatataattgggtatctcaaaataaacaacgggactagctagtaatgtggcttcttttgcaagagcatgagcaacctcgttggcttgtcgccta 36641379  T
Q  408 gcaaactccacccgagagttg 428  Q
     ||||||||||||||||||||    
T  36641378 acaaactccacccgagagttg 36641358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 48100785 - 48100881
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||||| | |  ||| ||||||||  |||||||||||   |||||||| ||||||| |||||| ||||||||||||||||| |||||||    
T  48100785 aaaataaacaacgggactaactagaaacgtggattctcctgcaagcacatgagcaaccacatttgcttgtcgcctagcaaactccaccctagagttg 48100881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 15633320 - 15633228
Alignment:
Q  336 taaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||| | | ||||  |||||||  |||| ||||||||||||||||| | ||||  |||||| |||| ||||||||||||||||||||    
T  15633320 taaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttg 15633228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 428
Target Start/End: Original strand, 30622473 - 30622637
Alignment:
Q  264 tttttatgaaataaaggtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtgg 363  Q
    ||||||||||| ||| |||||||| |||| ||||| || ||||||  | ||||| |||| ||| ||  | |||||  ||||| ||| ||||  || ||||    
T  30622473 tttttatgaaagaaatgtgcttatagcattttattgatgatcaaagattcaatacaattgggtatagcataataagaaacgggattagctaataatgtgg 30622572  T
Q  364 tctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
     ||||| ||||||| ||||||| | ||||| | |||||| |||  | ||||||||||||||||||    
T  30622573 cctctcttgcaagattatgagctaccacatatgcttgtcgcctgacgaactccacccgagagttg 30622637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 427
Target Start/End: Complemental strand, 32480361 - 32480215
Alignment:
Q  281 tgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagta 380  Q
    ||||||| |||| | ||||||||| | | || ||||| ||||  || ||| |||||||||  ||| | | |||| | |||||| ||| | ||||||||||    
T  32480361 tgcttatagcatttcattaataataagagtttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagta 32480262  T
Q  381 tgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    ||||||| ||| ||  |||||| |||| |||||||||||| ||||||    
T  32480261 tgagcaaccacgttggcttgtcgcctaacaaactccaccctagagtt 32480215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 26016597 - 26016528
Alignment:
Q  358 acgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    |||||||||||| || ||| | ||||| || | |||| |||||||||||| |||||||||||| ||||||    
T  26016597 acgtggtctctcttgtaagtgcatgagtaaccgcattgacttgtctcctaacaaactccaccctagagtt 26016528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 436
Target Start/End: Original strand, 45680113 - 45680253
Alignment:
Q  296 attaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacattt 395  Q
    ||||||||||||| |  ||||| |||| ||| || |||||||||||| || | | || | ||| |||| ||||| |||||||||||||||||||||||||    
T  45680113 attaataatcaaagtctcaatacaattgggtatacgaaaataaacaaagggactagcaaaaaatgtggcctctcttgcaagagtatgagcaatcacattt 45680212  T
Q  396 acttgtctcctagcaaactccacccgagagttgttgaactt 436  Q
      |  |||||||||||||| ||| ||| | ||| |||||||    
T  45680213 gttattctcctagcaaacttcactcgaaatttgatgaactt 45680253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 18357203 - 18357106
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacattt-acttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||||||||| ||||  |||||||  ||||||||||||| |||||||||| | |||  ||| || |||| |||||||||||| |||||||    
T  18357203 aaaataaacaacggaattagctagtaacgtggcttctcctgcaagagcatgagcaatcccgtttggcttatcacctaacaaactccaccctagagttg 18357106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 53437597 - 53437536
Alignment:
Q  366 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    |||| |||||||| |||||||||| |||| |||||||||||| |||||||||||| ||||||    
T  53437597 tctcttgcaagagcatgagcaatcgcattgacttgtctcctaacaaactccaccctagagtt 53437536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 428
Target Start/End: Complemental strand, 49499486 - 49499409
Alignment:
Q  351 gctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||| ||||||||  |||| |||||||  |||||||  ||||||| |||||| ||||||||||||||||| |||||||    
T  49499486 gctagaaacgtggcttctcttgcaagaacatgagcagccacatttgcttgtcgcctagcaaactccaccctagagttg 49499409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 53394896 - 53394835
Alignment:
Q  366 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    |||| |||||||| |||||||| | |||| ||||||||||||  ||||||||||| ||||||    
T  53394896 tctcttgcaagagcatgagcaaccgcattcacttgtctcctaaaaaactccaccctagagtt 53394835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 16739475 - 16739571
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||||| | | ||||  |||||||  |||| |||||||| || ||||||| | ||   ||||| |||| ||||||||||||||||||||    
T  16739475 aaaataaacaacgggactagctagtaacgtggcttctcttgcaagagcattagcaatctcgttggtttgtcgcctaacaaactccacccgagagttg 16739571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 549
Target Start/End: Complemental strand, 1170 - 989
Alignment:
Q  369 cctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataa 467  Q
    ||||| ||||| ||||| | ||||||  |||||| || | |||||||||||||||||||| | |||||||| ||||| ||  || || ||||||||||||    
T  1170 cctgcgagagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagactggaaagccgtgataa 1071  T
Q  468 tattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatatt 549  Q
    | || || |||||||  |||||||||| |||  ||||||   |  |||| ||||||||||| || |||||||| || |||||    
T  1070 tgttgccaaattcagttatgtcttcccgacccgagtaaagagcgtcttttgtggttttggagtcgacttcaaaatcaatatt 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 296 - 439
Target Start/End: Original strand, 54027711 - 54027854
Alignment:
Q  296 attaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacattt 395  Q
    ||||||||||||| || |||||||||| ||| |||||||||||| | ||| | | || | ||| ||||  || ||| ||||||| ||||| | ||||||     
T  54027711 attaataatcaaagtttcaatataattgggtatatgaaaataaatagcgggagtagcgagaaatgtggcttcccctacaagagtgtgagccaccacatta 54027810  T
Q  396 acttgtctcctagcaaactccacccgagagttgttgaacttgga 439  Q
     |||||| ||||  ||||||||||| ||||||| | ||||||||    
T  54027811 gcttgtcgcctaaaaaactccaccctagagttggtaaacttgga 54027854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 540
Target Start/End: Complemental strand, 12355375 - 12355110
Alignment:
Q  276 aaaggtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaa 375  Q
    |||||||||||  |||| | ||||||||||||| || ||||| |||| ||| |||||||||| | |  || | | || | ||| ||||| ||   || ||    
T  12355375 aaaggtgcttaaagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagtgggactagcgagaaatgtggtttcctttggaa 12355276  T
Q  376 gagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataatattacc 474  Q
    |||| ||||| | ||||||  |||||| |||| |||||||||||| ||||||| | ||||||||  | || ||| |||||||||| ||||| ||||| ||    
T  12355275 gagtgtgagccaccacattaccttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctgtgatgatatttcc 12355176  T
Q  475 taattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaa 540  Q
     ||||| |  |||||||||| |||  | ||||  ||| |||| |||||||| || || ||||||||    
T  12355175 aaattccgttatgtcttcccgacccgaataaagaccatcttttgtggttttagagtcgacttcaaa 12355110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 579
Target Start/End: Original strand, 49746142 - 49746199
Alignment:
Q  522 ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaa 579  Q
    |||| |||||||||||||| ||||||||||| |||||||  || ||||||||||||||    
T  49746142 tttttgaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaa 49746199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 37061094 - 37061190
Alignment:
Q  332 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 428  Q
    |||||||||||||| | | |||| |||| |||  |||| ||||||   |||||||| |||||||  ||||| ||||||||||||||||| |||||||    
T  37061094 aaaataaacaacgggactagctagaaacatggcttctcttgcaagcacatgagcaaccacatttgtttgtcacctagcaaactccaccctagagttg 37061190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 427
Target Start/End: Complemental strand, 18878321 - 18878174
Alignment:
Q  280 gtgcttattgcatattattaataatcaaaattccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagt 379  Q
    |||||||| |||| | ||||||||| | | || ||||| || | ||| ||| | ||||||| |||  ||| |||| |||||||| ||||| ||||| ||     
T  18878321 gtgcttatagcatttcattaataataatagtttcaatacaagtgggtatatcataataaacgacgagattagctaaaaacgtggcctctcgtgcaaaagc 18878222  T
Q  380 atgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 427  Q
    ||||||||   |||| ||||||| |||| |||||||||||| ||||||    
T  18878221 atgagcaactgcattgacttgtcgcctaacaaactccaccctagagtt 18878174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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