View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0706_low_2 (Length: 516)
Name: NF0706_low_2
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0706_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 98 - 502
Target Start/End: Original strand, 394445 - 394849
Alignment:
| Q |
98 |
acaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgcgaatgaagtttcttgatgttggtttctattttta |
197 |
Q |
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| T |
394445 |
acaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaagtttcttgatgttggtttctattttta |
394544 |
T |
|
| Q |
198 |
acttttgtgggattgaaactttctgaatttgaagacnnnnnnnaatttgggaatttctaaatttggatcacattatgtattgttgaatgtgtctgaaatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
394545 |
acttttgtgggattgaaactttctgaatttgaagactttttttaatttgggaatttctaaatttggatcacattatgtatttttgactgtgtctgaaatt |
394644 |
T |
|
| Q |
298 |
ggtctcttgaatatgatttctttggtttgtcttttgaatttcattatctgaattgaatattgaatgcaacaataggtgattgagaatttgagattatgtt |
397 |
Q |
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| T |
394645 |
ggtctcttgaatatgatttctttggtttgtcttttgaatttcattatctgaattgaatattgaatgcaacaataggtgattgagaatttgagattatgtt |
394744 |
T |
|
| Q |
398 |
attttagaactttttaatgattatttgatatggtaattcattgtgttgagttgattatttctgaattttttgaatgattattacattttggtaatttact |
497 |
Q |
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| T |
394745 |
attttagaactttttaatgattatttgatatggtaattcattgtgttgagttgattatttctgaattttttgaatgattattacattttggtaatttact |
394844 |
T |
|
| Q |
498 |
gtatt |
502 |
Q |
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| T |
394845 |
gtatt |
394849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 98 - 330
Target Start/End: Original strand, 19764995 - 19765230
Alignment:
| Q |
98 |
acaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgcgaatgaagtttcttgatgttggtttctattttta |
197 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
19764995 |
acaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaagtttcttgat-tttgtttctattttt- |
19765092 |
T |
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| Q |
198 |
acttttgtgggattgaaactttctgaatttgaagacnnnnnnnaatttgggaatttctaaatttg-----gatcacattatgtattgttgaatgtgtctg |
292 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||||| |
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| T |
19765093 |
tcttttgtggaattgaaactttctgaatttgaagactttttttaatttgggattttctaaattggatcataatcacattatgtattgttgattgtgtctg |
19765192 |
T |
|
| Q |
293 |
aaattggtctcttgaatatgatttctttggtttgtctt |
330 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
19765193 |
aaattggtctcttgaatacgatttctttggtttgtctt |
19765230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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