View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0706_low_5 (Length: 348)
Name: NF0706_low_5
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0706_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 340
Target Start/End: Original strand, 43224969 - 43225276
Alignment:
| Q |
30 |
tgaacaagcctaatacctcaaaacaatgcagcaaccaatcaacacacaattgattttctgtaacaatttatttattaagatactaatgtaaggaagatga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
43224969 |
tgaacaagcctaatacctcaaaacaatgcagcaaccaatcaacacacaattgattttctgtaacaatttatttattcagatgctaatgtaaggaagatga |
43225068 |
T |
|
| Q |
130 |
gttaccacatgagttaattaaataaatataagaatgaatatgcagcttttaattaagagaaaaggtaaaggatttgggagagtggaggagaataaagtgc |
229 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43225069 |
gttacgacatgagttaa----ataaatataagaatgaatatgcagcttttaattaagagaaaaggtaaaggatttgggagaatggaggagaataaagtgc |
43225164 |
T |
|
| Q |
230 |
ggcaacaacaatgctatatgcgtcctattttaatggaaatggaaatcaacttgttgaccagttaataagaaccattcgttggacgtt-catgaaggacct |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
43225165 |
ggcaacaacaatgctatatgcgtcctattttaatggaaatggaaatcaacttgttgaccagttaataagaaccattcgttggacgttccataaaggacct |
43225264 |
T |
|
| Q |
329 |
tgattctctgct |
340 |
Q |
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|||||||||||| |
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| T |
43225265 |
tgattctctgct |
43225276 |
T |
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