View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0706_low_6 (Length: 322)

Name: NF0706_low_6
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0706_low_6
NF0706_low_6
[»] chr2 (3 HSPs)
chr2 (143-318)||(20965523-20965694)
chr2 (171-219)||(25920889-25920939)
chr2 (45-77)||(20965436-20965468)
[»] chr8 (2 HSPs)
chr8 (177-218)||(16027755-16027796)
chr8 (187-219)||(23399182-23399214)
[»] chr3 (2 HSPs)
chr3 (171-218)||(17612625-17612672)
chr3 (184-219)||(26897316-26897351)
[»] chr5 (1 HSPs)
chr5 (171-219)||(35796865-35796915)
[»] chr7 (4 HSPs)
chr7 (185-219)||(7844583-7844617)
chr7 (185-219)||(7845953-7845987)
chr7 (185-216)||(30603833-30603864)
chr7 (185-219)||(23406299-23406333)
[»] chr1 (3 HSPs)
chr1 (185-219)||(34288414-34288448)
chr1 (171-216)||(40874374-40874419)
chr1 (233-287)||(34288322-34288376)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 143 - 318
Target Start/End: Original strand, 20965523 - 20965694
Alignment:
Q  143 tatacaagagtaaaataaagannnnnnnagacaccaaactcatatatatacacatggatattttagtaatttacttaggtattttaggtgtcatcaaatc 242  Q
    |||||||||||||||||||||       ||||||||||||||||||||    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  20965523 tatacaagagtaaaataaagatttttttagacaccaaactcatatata----catgtatattttagtaatatacttaggtattttaggtgtcatcaaatc 20965618  T
Q  243 tgtgtccatgtcnnnnnnntaacaggtagctaaatacccgttta-tatatccacagatacccacttatctacccacc 318  Q
     |||||||||||       ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  20965619 cgtgtccatgtc-aaaaaataacaggtagctaaatacccgtttattctatccacagatacccacttagctacccacc 20965694  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 25920889 - 25920939
Alignment:
Q  171 agacaccaaactc--atatatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25920889 agacaccaaactcttatatatatacacatggatattttagtaatttactta 25920939  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 20965436 - 20965468
Alignment:
Q  45 gagatgaaggagaagaagaaaatctggccgcac 77  Q
    |||||||||||||||||||||||||||||||||    
T  20965436 gagatgaaggagaagaagaaaatctggccgcac 20965468  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 16027796 - 16027755
Alignment:
Q  177 caaactcatatatatacacatggatattttagtaatttactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16027796 caaactcatatatatacacatggatattttagtaatttactt 16027755  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 23399182 - 23399214
Alignment:
Q  187 tatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||||||||||||||||||||||    
T  23399182 tatatacacatggatattttagtaatttactta 23399214  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 17612625 - 17612672
Alignment:
Q  171 agacaccaaactcatatatatacacatggatattttagtaatttactt 218  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17612625 agacaccaaactcttatatacacacatggatattttagtaatttactt 17612672  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 26897351 - 26897316
Alignment:
Q  184 atatatatacacatggatattttagtaatttactta 219  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26897351 atatatatacacatgaatattttagtaatttactta 26897316  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 35796865 - 35796915
Alignment:
Q  171 agacaccaaactc--atatatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  35796865 agacaccaaactcttatatatatacccatggatattttagtaatttactta 35796915  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 7844583 - 7844617
Alignment:
Q  185 tatatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||||||||||||||||||||||||    
T  7844583 tatatatacacatggatattttagtaatttactta 7844617  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 7845953 - 7845987
Alignment:
Q  185 tatatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||||||||||||||||||||||||    
T  7845953 tatatatacacatggatattttagtaatttactta 7845987  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 30603864 - 30603833
Alignment:
Q  185 tatatatacacatggatattttagtaatttac 216  Q
    ||||||||||||||||||||||||||||||||    
T  30603864 tatatatacacatggatattttagtaatttac 30603833  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 23406333 - 23406299
Alignment:
Q  185 tatatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||| ||||||||||||||||||||    
T  23406333 tatatatacacatgaatattttagtaatttactta 23406299  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 34288448 - 34288414
Alignment:
Q  185 tatatatacacatggatattttagtaatttactta 219  Q
    |||||||||||||||||||||||||||||||||||    
T  34288448 tatatatacacatggatattttagtaatttactta 34288414  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 40874419 - 40874374
Alignment:
Q  171 agacaccaaactcatatatatacacatggatattttagtaatttac 216  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  40874419 agacaccacactcttatatatacacatggatattttaataatttac 40874374  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 34288376 - 34288322
Alignment:
Q  233 tcatcaaatctgtgtccatgtcnnnnnnntaacaggtagctaaatacccgtttat 287  Q
    ||||||||||||||||| ||||       ||||||||||||||||||||||||||    
T  34288376 tcatcaaatctgtgtccgtgtccataaagtaacaggtagctaaatacccgtttat 34288322  T

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