View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0706_low_8 (Length: 270)
Name: NF0706_low_8
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0706_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 14073412 - 14073573
Alignment:
| Q |
69 |
gattattctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccnn |
168 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14073412 |
gattcttctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttcc-a |
14073510 |
T |
|
| Q |
169 |
nnnnnnngttttaatataacaaaatacatgtcaccgtttttaaaactatttatagagtaattc |
231 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14073511 |
taaaaaagttttaatataacaaaatacatgtgaccgtttttaaaactatttatagagtaattc |
14073573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 14080889 - 14081048
Alignment:
| Q |
69 |
gattattctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataattttcttccnn |
168 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14080889 |
gattcttctatggtaaggattctctttatttttaaaaaacaatgaagatttcgttactaatgttttgactttataaagttttaatataa-tttcttcc-- |
14080985 |
T |
|
| Q |
169 |
nnnnnnngttttaatataacaaaatacatgtcaccgtttttaaaactatttatagagtaattc |
231 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14080986 |
ataaaaagttttaatataacaaaatacatgtgaccgtttttaaaactatttatagagtaattc |
14081048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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