View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0706_low_9 (Length: 254)
Name: NF0706_low_9
Description: NF0706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0706_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 32101537 - 32101294
Alignment:
| Q |
1 |
ttgatttaataaatattcttgaatgttagtctaatttaattttcataaaaacaaaagccagcactagaacacatattaacctaattaattacaacataga |
100 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
32101537 |
ttgatttaataaatattcttgaatgttaggcaaatttaattttcttaaaaacaaaagcaagcactagaacacatatttacctacttaattacaacacaga |
32101438 |
T |
|
| Q |
101 |
agaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatgaatgacacgaaaatgaggaccgggagtattaacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
32101437 |
agaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatgaatgacacgaaaatgaggactaggagtatcaacac |
32101338 |
T |
|
| Q |
201 |
tcatggattaaattcaccaatatcacaagcttggctggtctctg |
244 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
32101337 |
tcgtggattaaattcaccaatatcacaagcttgactggtctctg |
32101294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 32103124 - 32102881
Alignment:
| Q |
1 |
ttgatttaataaatattcttgaatgttagtctaatttaattttcataaaaacaaaagccagcactagaacacatattaacctaattaattacaacataga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| | | |
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| T |
32103124 |
ttgatttgataaatattcttgaatgttagtctaatttaattttcttaaaaacaaaagcaagcactagaacacatattaacctacttaattacaacacata |
32103025 |
T |
|
| Q |
101 |
agaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatgaatgacacgaaaatgaggaccgggagtattaacac |
200 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
32103024 |
agaagattaatattataagaagtattacaggatctacaaaaacaaaatattgatcaaaaaatatgaaggacacgaaaatgaggactaggagtattaacac |
32102925 |
T |
|
| Q |
201 |
tcatggattaaattcaccaatatcacaagcttggctggtctctg |
244 |
Q |
| |
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|| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
32102924 |
tcgtggattaaattcaccaatatcacaagtttggttggtctctg |
32102881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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