View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-1 (Length: 630)
Name: NF0707-INSERTION-1
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-1 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 406 - 630
Target Start/End: Complemental strand, 394051 - 393827
Alignment:
| Q |
406 |
gcactcactagcgaatgaactcaacgctcnnnnnnngcaccaaaaagaaaggatagttgataaactcgtttagaatgatttttatatttgattaattatc |
505 |
Q |
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| T |
394051 |
gcactcactagcgaatgaactcaacgctctgtttttgcgccaaaaagaaaggatggttgataaactcgtttagaatgatttttatatttgattaattatc |
393952 |
T |
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| Q |
506 |
tgattgaatttgtaaactttaatctttaaactataaacaacttgatttagcttataaaaacactataagttcactaagataaaataagctataagctctt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
393951 |
tgattgaatttgtaaactttaatctttaaactataaacaacttgatttagcttataaaaacactataagttcactaagataagataagctataagctctt |
393852 |
T |
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| Q |
606 |
gagtaaatgataattatcaaatgag |
630 |
Q |
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| T |
393851 |
gagtaaatgataattatcaaatgag |
393827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 394450 - 394255
Alignment:
| Q |
8 |
gattgttcatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacactccaatataaaaaatttgatttttaaaagtttt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
394450 |
gattgttcatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacaccccaatataaaaaatttgatttttaaaagtttt |
394351 |
T |
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| Q |
108 |
ctgaagaacccattattgttttacgaagaattatc--tacccaccaaaatttacaatttttagatgaaaaatgcaataataaaaacaccccaataa |
201 |
Q |
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| T |
394350 |
ctcaagaacccattattgttttacgaagaataaacaaaacccaccaaaatttacaatttttagatgaaaaatgcaataataaaaacaccccaataa |
394255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 394201 - 394128
Alignment:
| Q |
256 |
cgttactttgatcagaggagagaaatggcaatgtggaagaagaatgtggaatgctgtttcatttgttcatgtct |
329 |
Q |
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| T |
394201 |
cgttactttgatcagaggagagaaatggcaatgtggaagaagaatgtggaatgctgtttcatttgttcatgtct |
394128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 19765000 - 19764808
Alignment:
| Q |
8 |
gattgttcatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacactccaatataa-aaaatttgatttttaaaagttt |
106 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||| |
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| T |
19765000 |
gattgtttatgaagaataatcaaaacccaccaacgtttttgaataaaaatgcattaaacagaaacaccccaatataaaaaaaattgatttttacaagttt |
19764901 |
T |
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| Q |
107 |
tctgaagaacccattattgttttacgaagaattatc--tacccacc--aaaatttacaatttttagatgaaaaatgcaataataaaaacaccc |
195 |
Q |
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||| |||||||||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19764900 |
tctcaagaacccattattgttttatgaagaataatcaaaacccaccaaaaaaattacaatttttagatgaaaaatgcaataataaaaacaccc |
19764808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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