View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707-INSERTION-10 (Length: 166)

Name: NF0707-INSERTION-10
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707-INSERTION-10
NF0707-INSERTION-10
[»] chr5 (1 HSPs)
chr5 (8-165)||(13484011-13484168)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 13484168 - 13484011
Alignment:
Q  8 atatcgatattaatcggtgccaaaatagcacgtatgaatcaagggctcattctccaacactataaagctagtataaattaaatttgcannnnnnnnnnnn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                
T  13484168 atatcgatattaatcggtgccaaaatagcacgtatgaatcaagggctcattctccaacactataaaactagtataaattaaatttgcatttttctttttc 13484069  T
Q  108 nnnnngcttcaaaaaacgaaccctaagctttatatttatagatgccatacatatactg 165  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13484068 tttttgcttcaaaaaacgaaccctaagctttatatttatagatgccatacatatactg 13484011  T

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