View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-11 (Length: 283)
Name: NF0707-INSERTION-11
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-11 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 15867428 - 15867704
Alignment:
| Q |
7 |
atgttggacatttccaaacggttctcagagcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgat |
106 |
Q |
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| T |
15867428 |
atgttggacatttccaaacggttctcagagcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgat |
15867527 |
T |
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| Q |
107 |
ccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15867528 |
ccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggct |
15867627 |
T |
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| Q |
207 |
attggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
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| T |
15867628 |
attggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
15867704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 45199095 - 45198971
Alignment:
| Q |
159 |
ggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaagagaatgactg |
258 |
Q |
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| T |
45199095 |
ggagggattcctattgcaatgccaacagtgttgtcagtgacaatggctattggttcacataggttgtctcaacaaggtgctatcacaaagagaatgacag |
45198996 |
T |
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| Q |
259 |
ccattgaagaaatggctggtatgga |
283 |
Q |
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| T |
45198995 |
ccattgaggaaatggctgggatgga |
45198971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 283
Target Start/End: Complemental strand, 21982158 - 21982046
Alignment:
| Q |
171 |
attgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaa |
270 |
Q |
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| T |
21982158 |
attgctatgccaactgtcttgtctgtgaccatggctattggatctcaccgcctttctcagcaaggagctatcaccaagaggatgacagccatcgaagaaa |
21982059 |
T |
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| Q |
271 |
tggctggtatgga |
283 |
Q |
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|||| || ||||| |
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| T |
21982058 |
tggcaggaatgga |
21982046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 53077072 - 53076825
Alignment:
| Q |
36 |
gcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcg |
135 |
Q |
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|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| || || || |||||||| || | || ||||| | |
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| T |
53077072 |
gcaattggaaacttctgcatttgttcgattgcagttggtatgttggctgagatcatagtcatgtacccaattcagcaccgcaagtacagagatggaattg |
53076973 |
T |
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| Q |
136 |
acaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaagg |
235 |
Q |
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| T |
53076972 |
acaatcttttggtccttttgatcggaggaattcccattgctatgcctactgtgttgtctgtaacaatggccatcggttcacaccggctctctcaacaagg |
53076873 |
T |
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| Q |
236 |
tgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
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| T |
53076872 |
tgctatcaccaaacgtatgactgctattgaagaaatggctggtatgga |
53076825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 283
Target Start/End: Complemental strand, 48438904 - 48438658
Alignment:
| Q |
37 |
caattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcga |
136 |
Q |
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||||||||||||| ||||| || ||||||||||| || |||||| |||||| || || ||||| || |||||||| | |||| | ||||| || || |
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| T |
48438904 |
caattggaaacttctgtatctgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcatatagagaaggtattga |
48438805 |
T |
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| Q |
137 |
caaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggt |
236 |
Q |
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||| | | || ||| | |||||||| || || || || |||||||| |||||||||||||| ||||||||||| ||||| | |||| ||||| |
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| T |
48438804 |
caatttgctggttcttctcatcggaggtatcccgatcgccatgccaacagttttgtctgtgaccatggctattggatctcaccgtttgtctcagcaagga |
48438705 |
T |
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| Q |
237 |
gctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
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|||||||| ||||| ||||| || |||||||||||||| || ||||| |
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| T |
48438704 |
gctattaccaagaggatgacagctattgaagaaatggccgggatgga |
48438658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 283
Target Start/End: Complemental strand, 1498601 - 1498353
Alignment:
| Q |
35 |
agcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatc |
134 |
Q |
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||||||||||||||| || |||||||| || || |||| || |||| |||| | ||||| ||||||||||| ||||||||||| ||| | || |||||| |
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| T |
1498601 |
agcaattggaaacttctgcatttgttcaatcgctattggaatattggttgagcttatagtgatgtatccgatacaacaccgcaagtatagagatggaatc |
1498502 |
T |
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| Q |
135 |
gacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaag |
234 |
Q |
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| T |
1498501 |
gacaatcttttggtgcttttgattggtggaattccaattgcaatgccaactgttttgtctgtcactatggctattggttctcataggctttcacagcaag |
1498402 |
T |
|
| Q |
235 |
gtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
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|||| |||||||| |||||||| || ||||| ||||||||||| ||||| |
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| T |
1498401 |
gtgcaattacaaaaagaatgacagctattgaggaaatggctggaatgga |
1498353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 283
Target Start/End: Original strand, 1460735 - 1460983
Alignment:
| Q |
35 |
agcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatc |
134 |
Q |
| |
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|||||||||||| || ||||||||||| ||||| ||||| || | |||||| || || ||||||||||| ||||||||||| ||| | || |||||| |
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| T |
1460735 |
agcaattggaaatttctgtatttgttcaattgctgttggaatactcattgagattattgtgatgtatccgatacaacaccgcaagtatagagatggaatc |
1460834 |
T |
|
| Q |
135 |
gacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaag |
234 |
Q |
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| T |
1460835 |
gacaatcttttggtgcttttgataggtggaattccaattgcaatgccaactgttttgtctgtcactatggctattggttctcataggctttcacagcaag |
1460934 |
T |
|
| Q |
235 |
gtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
| |
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|||| |||||||| |||||||| || ||||| ||||||||||| ||||| |
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| T |
1460935 |
gtgcaattacaaaaagaatgacagctattgaggaaatggctggaatgga |
1460983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 93 - 283
Target Start/End: Original strand, 50274610 - 50274800
Alignment:
| Q |
93 |
gtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgt |
192 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | || ||||| ||||| ||||| || || ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
50274610 |
gtcatgtatccgatacaacaccgcaagtatagagacggaattgacaatcttttggttctattgattggaggaattccaattgctatgccaactgttttgt |
50274709 |
T |
|
| Q |
193 |
ctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
| |
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|||| || ||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| |
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| T |
50274710 |
ctgttactatggctattggttctcacagactctctcaacaaggtgcaattacaaagagaatgacagctattgaggaaatggcagggatgga |
50274800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 283
Target Start/End: Original strand, 26788304 - 26788552
Alignment:
| Q |
35 |
agcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatc |
134 |
Q |
| |
|
|||||||||||| || || || ||||| ||||||||||| || | | |||||| || || ||||||||||| ||||| ||||| ||| | || ||||| |
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| T |
26788304 |
agcaattggaaatttctgcatctgttcaattgcagttggaatactcgttgagattattgtgatgtatccgatacaacatcgcaactatagagatggaatt |
26788403 |
T |
|
| Q |
135 |
gacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaag |
234 |
Q |
| |
|
|| || ||||| || || |||||||| |||||||| ||||| ||||||||||| || ||||| || ||||||||||||||||| | ||| | || |||| |
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| T |
26788404 |
gataatcttttggtgctcttgatcggtggaattccaattgcaatgccaactgtattatctgttactatggctattggttctcacaggctttcacagcaag |
26788503 |
T |
|
| Q |
235 |
gtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
| |
|
|||| || ||||| |||||||| || ||||| ||||||||||| ||||| |
|
|
| T |
26788504 |
gtgcaataacaaaaagaatgacagctattgaggaaatggctggaatgga |
26788552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 973889 - 973840
Alignment:
| Q |
234 |
ggtgctattacaaagagaatgactgccattgaagaaatggctggtatgga |
283 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
973889 |
ggtgctataacaaagagaatgactgctattgaagaaatggctggaatgga |
973840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 3153247 - 3153421
Alignment:
| Q |
37 |
caattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcga |
136 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| |||| ||| | | ||||||||| ||||||||||| || |||||| | ||||||||| |||||||| |
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| T |
3153247 |
caattgggaacttttgcatatgttcaattgctattggaatgattgttgagatcattgtcatgtatccaattcaacacaggaaatatcgtcctggaatcga |
3153346 |
T |
|
| Q |
137 |
caaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattgg |
211 |
Q |
| |
|
||| || | || ||| | || || |||||||||||||| ||||| ||||||||||| || |||||||| ||||| |
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|
| T |
3153347 |
caatctacttgtgcttctcattggtggaattcctattgccatgcctactgttttgtcagtcacaatggcaattgg |
3153421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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