View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-12 (Length: 426)
Name: NF0707-INSERTION-12
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 426
Target Start/End: Original strand, 1712535 - 1712957
Alignment:
| Q |
7 |
agattttgtgtttaccaacattataaactattttatttcaccttggtctcacaaaaaatcatgnnnnnnn---agatttatgggtttcatgattttgtct |
103 |
Q |
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| T |
1712535 |
agattttgtgtttaccaacattataaacaattttatttcaccttggtctcacaaaaaatcatgttttttttttagatttatgggtttcatgattttgtct |
1712634 |
T |
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| Q |
104 |
ttcacaagcttgcttttataattaattaattaannnnnnnnnnnnnnnnnnngtagtaacaattccattattgtaacaacaaatatgaagaaccaagttg |
203 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1712635 |
ttcataagcttgcttttataattaattaattaattatttttggttttgttttgtagtaacaattccattattgtaacaacaaatatgaagaaccaagttg |
1712734 |
T |
|
| Q |
204 |
gttatgttccacctgcttacattccattgggtcaatcagattcagaggcaatgagtgtctctcctctacaccatggtggtagtagcagcaatgtttcaaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1712735 |
gttatgttccacctgcttacattccattgggtcaatcagattcagaggcaatgagtctctctcctctacaccatggtggtagtagtagcaatgtttcaaa |
1712834 |
T |
|
| Q |
304 |
tcaatggtcttctggagtctgtgcttgtttcgatgatatgcagagctgtatgctacttccttaccttgtttaatcaccaaggtgcctcttgttgattatg |
403 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1712835 |
tcaatggtcttctggaatctgtgcttgtttcgatgatatgcagagctgtatgctacttccttaccttgtttaatcaccaaggtgcctcttgttgattatg |
1712934 |
T |
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| Q |
404 |
tatgtttgtttgtttaaggatat |
426 |
Q |
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| T |
1712935 |
tatgtttgtttgtttaaggatat |
1712957 |
T |
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