View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-13 (Length: 751)
Name: NF0707-INSERTION-13
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-13 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0248 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 611; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 8 - 751
Target Start/End: Original strand, 38475138 - 38475862
Alignment:
| Q |
8 |
atacattcattaattacgaaatatttgttgaatttacagagaatctaagtaatgctgtgttggttttatgaaccagtttatttccttatagatcttatga |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38475138 |
atacattcattaattacgaaatatttgttcaatttacaaagaatctaagtaatgctgtgttggttttatgaaccagtttatttccttatagatcttatga |
38475237 |
T |
|
| Q |
108 |
aagaaatatttcaatttcttgcaggtaccatcctaaatgcgtgggcatgccttttgaagaagcaatgaaatctgaagattttagatttgtttgttcaaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38475238 |
aagaaatatttcaatttcttgcaggtaccatcctaaatgcgtgggcatgccttttgaagaagcaatgaaatctgaagattttagatttgtttgttcaaaa |
38475337 |
T |
|
| Q |
208 |
tgttcacctgatttaaaggattagggacttagtaattggatattagtcttaaaagctgttttctttttcaaaggaaaatagatgaatcctctgagcagct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
38475338 |
tgttcacctgatttaaaggattagggacttagtaattggatattagtcttaaaagctgttttctttttcaaaggaaaatagatgaaccctctgagcggct |
38475437 |
T |
|
| Q |
308 |
agttgtggttggcaatgtgttgaactagtctgcatactggataccatggaagttgcctactgtttcttatgttatcataacacttttgttgattttactt |
407 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
38475438 |
agttgtggttggcaatgtgttgagctagtctgcatactggatcccatggaa----------gtttcttatgttatgataacacttttgttgattttactt |
38475527 |
T |
|
| Q |
408 |
gtcacatgcgtgtttcttcattcttggtaccatggtttgatttatctgtctgttttctgcatggcttttataagaaaagatttagaaattttttacagct |
507 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
38475528 |
gtcacatgtgtgtttcttcattcttggtaccatggtttgatttatttgtctgttttctgcatgtcttttataagaaaagattta--------ttacagct |
38475619 |
T |
|
| Q |
508 |
gaatgtgcttcaaagtgtaatttgttatgcacttaaaggttatcagatgattaaagatagactatagatatagtaggacataggcaccttcaatgttttt |
607 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38475620 |
gaatgtgcttcaaagtgtaattagttatgcacttaaaggttatcagatgaataaagatagactatagatatagtaggacataggcaccttcaatgttttt |
38475719 |
T |
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| Q |
608 |
aacacagatatgggtctgattaaaaggttcttggttaggcgaggattgattttcagtgttcaaaattgagttgcagttagtgtaaagtgaacgacctant |
707 |
Q |
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| T |
38475720 |
aacacagatatgggtctgatt-aaaggttcttggttaggcgtggattgattttcagtgttcaaaattgagttgcagttagtgtaaagtgaacgacctagt |
38475818 |
T |
|
| Q |
708 |
gttanggtacnatacatcacccaagttcagttttctatattgta |
751 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
38475819 |
gttagggtacaatacatcacccaagttcagttttctatattgta |
38475862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 238 - 449
Target Start/End: Original strand, 38469677 - 38469880
Alignment:
| Q |
238 |
agtaattggatattagtctta-aaagctgttttctttttcaaaggaaaatagatgaatcctctgagcagctagttgtggttggcaatgtgttgaa-ctag |
335 |
Q |
| |
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|||||||||||||| || ||| |||| | |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||| ||||| |||| |
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| T |
38469677 |
agtaattggatattggttttataaagttattttctttttcaaaggaaaatagatgaaccctttgagcagctagttgaagttggccatgtattgaagctag |
38469776 |
T |
|
| Q |
336 |
tctgcatactggataccatggaagttgcctactgtttcttatgttatcataacacttttgttgattttacttgtcacatgcgtgtttcttcattcttggt |
435 |
Q |
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| | |||||||| ||||||||||||||||||||||| | |||||| || ||||||| | | ||||||||| ||||||||||||||||| | |
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| T |
38469777 |
ttt----------taccatggtagttgcctactgtttcttatgttctgataacaattctgttgatgtgaaatgtcacatgtgtgtttcttcattcttgat |
38469866 |
T |
|
| Q |
436 |
accatggtttgatt |
449 |
Q |
| |
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||||| |||||||| |
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| T |
38469867 |
accattgtttgatt |
38469880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 578
Target Start/End: Original strand, 38469909 - 38469989
Alignment:
| Q |
498 |
ttttacagctgaatgtgcttcaaagtgtaatttgttatgcacttaaaggttatcagatgattaaagatagactatagatat |
578 |
Q |
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||||||| |||||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||| |||| ||||||||| |
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| T |
38469909 |
ttttacacctgaatgtgcttcaaagtgttattagttacacacttgaagaatatcagatgattaaacgtagagtatagatat |
38469989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 38469412 - 38469496
Alignment:
| Q |
54 |
aagtaatgctgtgttggttttatgaaccagtttatttccttatagatcttatgaaagaaatatttcaatttcttgcaggtaccatc |
139 |
Q |
| |
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||||| || |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| | |||||||||| | ||| |||||| |
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| T |
38469412 |
aagtactgttgtgttggttttatga-ccagtttatgtccttttagttcttatgaaagaatcacttcaatttctggtaggcaccatc |
38469496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 238 - 449
Target Start/End: Original strand, 17752816 - 17753019
Alignment:
| Q |
238 |
agtaattggatattagtctta-aaagctgttttctttttcaaaggaaaatagatgaatcctctgagcagctagttgtggttggcaatgtgttgaa-ctag |
335 |
Q |
| |
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|||||||||||||| || ||| |||| | |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||| ||||| |||| |
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| T |
17752816 |
agtaattggatattggttttataaagttattttctttttcaaaggaaaatagatgaaccctttgagcagctagttgaagttggccatgtattgaagctag |
17752915 |
T |
|
| Q |
336 |
tctgcatactggataccatggaagttgcctactgtttcttatgttatcataacacttttgttgattttacttgtcacatgcgtgtttcttcattcttggt |
435 |
Q |
| |
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| | |||||||||||||||||||||||||||||||| | |||||| || ||||||| | | ||||||||| ||||||||||||||||| | |
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| T |
17752916 |
ttt----------taccatggaagttgcctactgtttcttatgttctgataacaattctgttgatgtgaaatgtcacatgtgtgtttcttcattcttgat |
17753005 |
T |
|
| Q |
436 |
accatggtttgatt |
449 |
Q |
| |
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||||| |||||||| |
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| T |
17753006 |
accattgtttgatt |
17753019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 238 - 449
Target Start/End: Original strand, 1534606 - 1534809
Alignment:
| Q |
238 |
agtaattggatattagtctta-aaagctgttttctttttcaaaggaaaatagatgaatcctctgagcagctagttgtggttggcaatgtgttgaa-ctag |
335 |
Q |
| |
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|||||||||||||| || ||| |||| | | |||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||| ||||| |||| |
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| T |
1534606 |
agtaattggatattggttttataaagttatattctttttcaaaggaaaatagatgaaccctttgagcagctagttgaagttggccatgtattgaagctag |
1534705 |
T |
|
| Q |
336 |
tctgcatactggataccatggaagttgcctactgtttcttatgttatcataacacttttgttgattttacttgtcacatgcgtgtttcttcattcttggt |
435 |
Q |
| |
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| | |||||||||||||||||||||||||||||||| | |||||| || ||||||| | | ||||||||| ||||||||||||||||| | |
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| T |
1534706 |
ttt----------taccatggaagttgcctactgtttcttatgttctgataacaattctgttgatgtgaaatgtcacatgtgtgtttcttcattcttgat |
1534795 |
T |
|
| Q |
436 |
accatggtttgatt |
449 |
Q |
| |
|
||||| |||||||| |
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| T |
1534796 |
accattgtttgatt |
1534809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 578
Target Start/End: Original strand, 1534838 - 1534918
Alignment:
| Q |
498 |
ttttacagctgaatgtgcttcaaagtgtaatttgttatgcacttaaaggttatcagatgattaaagatagactatagatat |
578 |
Q |
| |
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||||||| |||||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||| |||| ||||||||| |
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| T |
1534838 |
ttttacacctgaatgtgcttcaaagtgttattagttacacacttgaagaatatcagatgattaaacgtagagtatagatat |
1534918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 578
Target Start/End: Original strand, 17753048 - 17753128
Alignment:
| Q |
498 |
ttttacagctgaatgtgcttcaaagtgtaatttgttatgcacttaaaggttatcagatgattaaagatagactatagatat |
578 |
Q |
| |
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||||||| |||||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||| |||| ||||||||| |
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| T |
17753048 |
ttttacacctgaatgtgcttcaaagtgttattagttacacacttgaagaatatcagatgattaaacgtagagtatagatat |
17753128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 17752549 - 17752635
Alignment:
| Q |
54 |
aagtaatgctgtgttggttttatgaaccagtttatttcc-ttatagatcttatgaaagaaatatttcaatttcttgcaggtaccatc |
139 |
Q |
| |
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||||| || |||||||||||| ||||||||||||| ||| || ||| ||||||||||||| | |||||||||||| ||| |||||| |
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| T |
17752549 |
aagtactgttgtgttggttttgtgaaccagtttatgtcctttttagttcttatgaaagaatcacttcaatttcttgtagggaccatc |
17752635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 1534339 - 1534425
Alignment:
| Q |
54 |
aagtaatgctgtgttggttttatgaaccagtttatttcc-ttatagatcttatgaaagaaatatttcaatttcttgcaggtaccatc |
139 |
Q |
| |
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||||| || |||||||||||| ||||| ||||||| ||| || ||| ||||||||||||| | |||||||||||| ||| |||||| |
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| T |
1534339 |
aagtactgttgtgttggttttgtgaactagtttatgtcctttttagttcttatgaaagaatcacttcaatttcttgtagggaccatc |
1534425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 238 - 449
Target Start/End: Complemental strand, 14113 - 13911
Alignment:
| Q |
238 |
agtaattggatattagtctta-aaagctgttttctttttcaaaggaaaatagatgaatcctctgagcagctagttgtggttggcaatgtgttgaactagt |
336 |
Q |
| |
|
|||||||||||||| || ||| |||| | |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||| | | ||||| |
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| T |
14113 |
agtaattggatattggttttataaagttattttctttttcaaaggaaaatagatgaaccctttgagcagctagttgaagttggccatgtatgaagctagt |
14014 |
T |
|
| Q |
337 |
ctgcatactggataccatggaagttgcctactgtttcttatgttatcataacacttttgttgattttacttgtcacatgcgtgtttcttcattcttggta |
436 |
Q |
| |
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| |||||||||||||||||||||||||||||||| | |||||| || ||||||| | | ||||||||| ||||||||||||||||| || |
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| T |
14013 |
tt----------taccatggaagttgcctactgtttcttatgttctgataacaattctgttgatgtgaaatgtcacatgtgtgtttcttcattcttgata |
13924 |
T |
|
| Q |
437 |
ccatggtttgatt |
449 |
Q |
| |
|
|||| |||||||| |
|
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| T |
13923 |
ccattgtttgatt |
13911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 14379 - 14294
Alignment:
| Q |
54 |
aagtaatgctgtgttggttttatgaaccagtttatttccttatagatcttatgaaagaaatatttcaatttcttgcaggtaccatc |
139 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||| ||||| ||| ||||||||||||| | |||||||||| | ||| |||||| |
|
|
| T |
14379 |
aagtactgttgtgttggttttgtgaaccagtttatgtccttttagttcttatgaaagaatcacttcaatttctggtaggcaccatc |
14294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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