View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707-INSERTION-14 (Length: 766)

Name: NF0707-INSERTION-14
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707-INSERTION-14
NF0707-INSERTION-14
[»] chr7 (35 HSPs)
chr7 (8-699)||(38098495-38099167)
chr7 (170-368)||(48716770-48716973)
chr7 (639-699)||(16189130-16189190)
chr7 (640-699)||(6587734-6587793)
chr7 (640-699)||(7835242-7835301)
chr7 (640-699)||(27895082-27895141)
chr7 (640-699)||(38150388-38150447)
chr7 (640-699)||(46940017-46940076)
chr7 (638-699)||(32801777-32801838)
chr7 (640-699)||(3176134-3176193)
chr7 (640-699)||(7118278-7118337)
chr7 (640-699)||(19893634-19893693)
chr7 (640-699)||(29665968-29666027)
chr7 (640-699)||(36333148-36333207)
chr7 (640-697)||(47749062-47749119)
chr7 (640-699)||(1783557-1783616)
chr7 (640-699)||(23980057-23980116)
chr7 (640-699)||(28147053-28147112)
chr7 (570-629)||(48716596-48716655)
chr7 (710-760)||(7118208-7118257)
chr7 (710-760)||(23979988-23980037)
chr7 (710-760)||(29172301-29172350)
chr7 (710-759)||(1783636-1783684)
chr7 (710-759)||(6587666-6587714)
chr7 (710-759)||(7835152-7835200)
chr7 (710-759)||(16189059-16189107)
chr7 (710-759)||(29666046-29666094)
chr7 (710-759)||(36333074-36333122)
chr7 (711-760)||(38098426-38098474)
chr7 (710-759)||(46940096-46940144)
chr7 (710-758)||(32801711-32801758)
chr7 (710-758)||(47748993-47749040)
chr7 (710-760)||(44073833-44073882)
chr7 (535-625)||(48717129-48717218)
chr7 (710-759)||(38150468-38150516)
[»] chr1 (16 HSPs)
chr1 (640-699)||(40977153-40977212)
chr1 (640-699)||(7351448-7351507)
chr1 (639-699)||(9411948-9412008)
chr1 (640-699)||(13832674-13832733)
chr1 (640-699)||(31924481-31924540)
chr1 (640-699)||(42434679-42434738)
chr1 (642-699)||(37350652-37350709)
chr1 (640-699)||(29824190-29824249)
chr1 (640-699)||(40535443-40535502)
chr1 (710-760)||(9412029-9412078)
chr1 (567-640)||(31571764-31571837)
chr1 (710-759)||(40535575-40535623)
chr1 (710-758)||(7351377-7351424)
chr1 (710-757)||(31924559-31924605)
chr1 (710-759)||(29824275-29824323)
chr1 (710-759)||(42434611-42434659)
[»] chr8 (27 HSPs)
chr8 (637-699)||(29601276-29601338)
chr8 (640-699)||(10582096-10582155)
chr8 (640-699)||(14122394-14122453)
chr8 (640-699)||(26426920-26426979)
chr8 (640-699)||(34501233-34501292)
chr8 (639-699)||(10953727-10953787)
chr8 (639-699)||(10961732-10961792)
chr8 (640-699)||(14123355-14123414)
chr8 (640-699)||(21405863-21405922)
chr8 (640-699)||(21800355-21800414)
chr8 (640-699)||(33817650-33817709)
chr8 (710-759)||(4078854-4078902)
chr8 (639-695)||(10334730-10334786)
chr8 (640-699)||(37233484-37233543)
chr8 (710-759)||(10582187-10582235)
chr8 (710-759)||(10953654-10953702)
chr8 (710-759)||(10961659-10961707)
chr8 (710-759)||(33817582-33817630)
chr8 (710-759)||(34501164-34501212)
chr8 (710-759)||(37233568-37233616)
chr8 (710-758)||(21405796-21405843)
chr8 (710-758)||(21800288-21800335)
chr8 (710-758)||(29601208-29601255)
chr8 (638-697)||(33317598-33317657)
chr8 (642-699)||(4078767-4078824)
chr8 (710-759)||(10334669-10334717)
chr8 (710-759)||(26426852-26426900)
[»] chr4 (22 HSPs)
chr4 (634-699)||(21629409-21629474)
chr4 (640-699)||(28714299-28714358)
chr4 (638-699)||(26619161-26619222)
chr4 (639-699)||(40219160-40219220)
chr4 (639-699)||(46580288-46580348)
chr4 (640-699)||(1121463-1121522)
chr4 (640-699)||(6890966-6891025)
chr4 (640-699)||(32129153-32129212)
chr4 (640-699)||(53228119-53228178)
chr4 (642-699)||(56038081-56038138)
chr4 (640-759)||(50435831-50435947)
chr4 (640-699)||(43100546-43100605)
chr4 (640-699)||(48833043-48833102)
chr4 (710-760)||(43100472-43100521)
chr4 (640-699)||(576023-576082)
chr4 (640-699)||(13229774-13229833)
chr4 (710-759)||(13229705-13229753)
chr4 (710-760)||(21629494-21629543)
chr4 (710-756)||(26619243-26619288)
chr4 (710-759)||(1121395-1121443)
chr4 (710-759)||(1124233-1124281)
chr4 (710-759)||(48832966-48833014)
[»] chr6 (7 HSPs)
chr6 (640-699)||(4486762-4486821)
chr6 (640-699)||(14206577-14206636)
chr6 (640-699)||(23219558-23219617)
chr6 (640-699)||(31715342-31715401)
chr6 (710-759)||(23219489-23219537)
chr6 (710-755)||(4486697-4486741)
chr6 (710-759)||(14206657-14206705)
[»] chr3 (34 HSPs)
chr3 (640-699)||(40690495-40690554)
chr3 (638-699)||(52722597-52722658)
chr3 (639-699)||(43171574-43171634)
chr3 (640-699)||(4971113-4971172)
chr3 (640-699)||(10695950-10696009)
chr3 (640-699)||(14242911-14242970)
chr3 (640-699)||(24596240-24596299)
chr3 (640-699)||(45906055-45906114)
chr3 (641-699)||(52553326-52553384)
chr3 (639-699)||(50517206-50517266)
chr3 (640-699)||(8034526-8034585)
chr3 (640-699)||(38572927-38572986)
chr3 (640-699)||(39625353-39625412)
chr3 (640-699)||(53175752-53175811)
chr3 (710-759)||(24596332-24596380)
chr3 (638-682)||(38834614-38834658)
chr3 (710-759)||(4971039-4971087)
chr3 (710-759)||(14242838-14242886)
chr3 (710-759)||(38572847-38572895)
chr3 (710-759)||(40690582-40690630)
chr3 (710-759)||(52553403-52553451)
chr3 (710-759)||(52722530-52722578)
chr3 (710-759)||(53175828-53175876)
chr3 (710-754)||(24657009-24657052)
chr3 (639-699)||(24657072-24657132)
chr3 (710-758)||(39625432-39625479)
chr3 (710-758)||(45906134-45906181)
chr3 (640-699)||(10475820-10475879)
chr3 (710-757)||(10475906-10475952)
chr3 (462-597)||(31588224-31588358)
chr3 (640-699)||(54245119-54245178)
chr3 (710-759)||(8034455-8034503)
chr3 (710-759)||(10695881-10695929)
chr3 (710-755)||(26406941-26406985)
[»] chr2 (19 HSPs)
chr2 (640-699)||(28439926-28439985)
chr2 (638-699)||(45463694-45463755)
chr2 (639-699)||(5003599-5003659)
chr2 (640-699)||(4391665-4391724)
chr2 (640-699)||(15381952-15382011)
chr2 (640-699)||(34599714-34599773)
chr2 (640-699)||(38033640-38033699)
chr2 (634-699)||(25459618-25459683)
chr2 (639-699)||(12131520-12131580)
chr2 (643-699)||(16492421-16492477)
chr2 (639-699)||(38903347-38903407)
chr2 (577-629)||(38247811-38247863)
chr2 (710-760)||(12131451-12131500)
chr2 (710-759)||(25459553-25459601)
chr2 (710-759)||(34599647-34599695)
chr2 (710-758)||(5003531-5003578)
chr2 (710-758)||(16492497-16492544)
chr2 (710-758)||(45463624-45463671)
chr2 (710-759)||(28439859-28439907)
[»] chr5 (10 HSPs)
chr5 (639-699)||(25764347-25764407)
chr5 (640-699)||(3466326-3466385)
chr5 (640-699)||(22527585-22527644)
chr5 (640-699)||(3514455-3514514)
chr5 (640-699)||(19858259-19858318)
chr5 (641-699)||(21145864-21145922)
chr5 (640-699)||(794511-794570)
chr5 (710-759)||(19858191-19858239)
chr5 (710-759)||(25764279-25764327)
chr5 (710-759)||(21145797-21145845)
[»] scaffold0054 (1 HSPs)
scaffold0054 (640-699)||(30371-30430)
[»] scaffold0208 (2 HSPs)
scaffold0208 (710-759)||(2992-3040)
scaffold0208 (640-699)||(3062-3121)


Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 699
Target Start/End: Complemental strand, 38099167 - 38098495
Alignment:
Q  8 attatctcttctttctcttatggtaatggctcattgaacgttgtactgagttttctaaatttagagaagaccatcactgaaattccctcttattttcctt 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| | |||| |||||||||||| |||||| |||            ||    
T  38099167 attatctcttctttctcttatggcaatggctcattgaacgttgcattgagttttccagatttggagaagaccatcgctgaaactcc------------tt 38099080  T
Q  108 ctcgcatgtcctttttcccaattatccattgagactttccaataaacacaacttgtaatttagattttgaagcatatattaagagtaaattcatagtaat 207  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38099079 ctcgcatgtcctttttcccaattat----tgagactttccaataaacacaacttgtaatttagattttgaagcatatattaagagtaaattcatagtaat 38098984  T
Q  208 ttgtggtttgttggaacttgcaatcatcattgagatgaaattagacaatgaaagtgcaaatctcaaatttctggccataaaccaatatccaaattatttg 307  Q
    | |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38098983 tcgtggtttgttggaacttgcaatcat---tgagatgaaattagacaatgaaagtgcaaatctcaaatttgtggccataaaccaatatccaaattatttg 38098887  T
Q  308 atttcaataatcttcaaatgcaagcagtacttttgtttcctttcaaaatttgggataaatttttcatgtcgtatcatgatacctgtggttttcaattgaa 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38098886 atttcaataatcttcaaatgcaagaagtacttttgtttcctttcaaaatttgggataaatttttcatgtcgtatcatgatacctgtggttttcaattgaa 38098787  T
Q  408 gcttgttgccatcttatattcttgtcgagatattttaaaatagaaggtttgctctggtatggctgaacgatggttgctttgatttttcatttagggaatt 507  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  38098786 gcttgctgccatcttatattcttgtcgagatattttaaaatagaaagtttgctctggtatggctgaacgatgtttgctttgatttgtcatttagggaatt 38098687  T
Q  508 aggttttgctgacggtataattagagaagagaaagaagagaggatcatgtgtgtcgcgttattgatttattttttaaattaagttgtgagccattcgatt 607  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  38098686 aggttttgttgacggtataattagagaagagaaagaagagaggatcatgtgtgtcgcgttattgatttgttttttaaaataagttgtgagccattcgatt 38098587  T
Q  608 gatttgatctaatggttgagatatggtttaagcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||  ||||||||||||| || ||||||||| ||||||||||||||||||||||||| || | ||||||| |||  | |||||||||||||    
T  38098586 gattaaatctaatggttgatatttggtttaagaagggccggcccatagcccgtcgaggctgggagacgacatcgggccaccaattttttggg 38098495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 170 - 368
Target Start/End: Complemental strand, 48716973 - 48716770
Alignment:
Q  170 gattttgaagcatatattaagagtaaattcatagtaatttgtggtttgttggaacttgcaatcatcattgagatgaaattagacaatgaaagtgcaaatc 269  Q
    ||||||||||||||| | || | | |||||||| ||||||||||||| |||||||   | |  ||||||||||||||||||||  |||||||| || |||    
T  48716973 gattttgaagcatatgtcaataattaattcatattaatttgtggttttttggaac---cgaaaatcattgagatgaaattagatgatgaaagtacagatc 48716877  T
Q  270 --------tcaaatttctggccataaaccaatatccaaattatttgatttcaataatcttcaaatgcaagcagtacttttgtttcctttcaaaatttggg 361  Q
            |||||||| ||||||||||||||||||||| || || ||||||||||||||| |||||  ||  | ||||||||||||||||||||||||||    
T  48716876 agtgagtctcaaatttgtggccataaaccaatatccaagtttttcgatttcaataatctttaaatgtcagatgcacttttgtttcctttcaaaatttggg 48716777  T
Q  362 ataaatt 368  Q
    |||||||    
T  48716776 ataaatt 48716770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 16189190 - 16189130
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  16189190 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 16189130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 6587793 - 6587734
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  6587793 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 6587734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 7835301 - 7835242
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||    
T  7835301 cagggccggcccatagcccgtcaaggctgggcgacgacaccggacctccaattttttggg 7835242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 27895082 - 27895141
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  27895082 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 27895141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 38150388 - 38150447
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  38150388 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 38150447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 46940017 - 46940076
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  46940017 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 46940076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 699
Target Start/End: Complemental strand, 32801838 - 32801777
Alignment:
Q  638 agcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||| |||||||||| || |||||||||| || ||||||||||||||||    
T  32801838 agcagggccggcccataacccgtcgaggctgggcgacgacactgggtctccaattttttggg 32801777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 3176193 - 3176134
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||| ||||    
T  3176193 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttatggg 3176134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 7118337 - 7118278
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| || ||||||||||||    
T  7118337 cagggccggcctatagcccatcgaggttgggcgacgacaccggaccttcaattttttggg 7118278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 19893693 - 19893634
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || ||||| |||||||  |||||||||||||||    
T  19893693 cagggccggcccatagcccgtcgaggatgggcgacaacaccgggcctccaattttttggg 19893634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 29665968 - 29666027
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||| ||||||||    
T  29665968 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaactttttggg 29666027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 36333207 - 36333148
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||  || |||||||||||||  |||||||||||||||    
T  36333207 cagggccggcccatagcccgtcgagactgggcgacgacaccgggcctccaattttttggg 36333148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 640 - 697
Target Start/End: Complemental strand, 47749119 - 47749062
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttg 697  Q
    |||||||||||||||||||||||||| || |||| ||||||||  |||||||||||||    
T  47749119 cagggccggcccatagcccgtcgaggctgggcgatgacaccgggcctccaattttttg 47749062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 1783557 - 1783616
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||| ||||||||||||||||||| || |||||||||||||  |||||| ||||||||    
T  1783557 cagggctggcccatagcccgtcgaggctgggcgacgacaccgggcctccaactttttggg 1783616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 23980116 - 23980057
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||| ||||||||||||||||||||| || ||||||| |||||  |||||||||||||||    
T  23980116 caggaccggcccatagcccgtcgaggctgggcgacgataccgggcctccaattttttggg 23980057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 28147053 - 28147112
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||| |||||||||||||| || ||||||||| |||  |||||||||||||||    
T  28147053 cagggccggcctatagcccgtcgaggctgagcgacgacatcgggcctccaattttttggg 28147112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 570 - 629
Target Start/End: Complemental strand, 48716655 - 48716596
Alignment:
Q  570 tgatttattttttaaattaagttgtgagccattcgattgatttgatctaatggttgagat 629  Q
    |||||| ||||||||| ||| || |||||||||||||||||| ||| |||||||||||||    
T  48716655 tgatttgttttttaaaataaattatgagccattcgattgattagatttaatggttgagat 48716596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 7118257 - 7118208
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  7118257 atatgtaagacacgaaaataatag-ttatatatctattaaaagcaaattat 7118208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 23980037 - 23979988
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||||||    
T  23980037 atatgtaagacacgaaaataat-ggttatatatttattaaaagcaaattat 23979988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 29172350 - 29172301
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  29172350 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaattat 29172301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 1783636 - 1783684
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  1783636 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 1783684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 6587714 - 6587666
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  6587714 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 6587666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 7835200 - 7835152
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  7835200 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 7835152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 16189107 - 16189059
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  16189107 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 16189059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 29666046 - 29666094
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  29666046 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 29666094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 36333122 - 36333074
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  36333122 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 36333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 760
Target Start/End: Complemental strand, 38098474 - 38098426
Alignment:
Q  711 tatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  38098474 tatgtaagacacgaaaagaatgg-ttatatatctattaaaagcaaattat 38098426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 46940096 - 46940144
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  46940096 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 46940144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 32801758 - 32801711
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  32801758 atatgtaagacatgaaaataatgg-ttatatatctattaaaagcaaatt 32801711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 47749040 - 47748993
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  47749040 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 47748993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 44073833 - 44073882
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||| ||||    
T  44073833 atatgtaagacacgaaaataat-agttatatatctattaaaagcaatttat 44073882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 535 - 625
Target Start/End: Original strand, 48717129 - 48717218
Alignment:
Q  535 agagaaagaagagaggatcatgtgtgtcgcgttattgatttattttttaaattaagttgtgagccattcgattgatttgatctaatggttg 625  Q
    ||||||||||||||| ||| |||||||| |  || | |||| ||||||||||||| || |||| |||| |||||||| ||| |||||||||    
T  48717129 agagaaagaagagagaatcgtgtgtgtctcactactaattt-ttttttaaattaaattatgagtcatttgattgattagatttaatggttg 48717218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 38150468 - 38150516
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||||||||||||||| | ||||||||||||| ||||| |||||    
T  38150468 atatgtaagacacgaaaataat-gattatatatctattaaaagcgaatta 38150516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 40977212 - 40977153
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  40977212 cagggccggcccatagcccgtcgaggttgggcgacgacaccggacctccaattttttggg 40977153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 7351507 - 7351448
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||    
T  7351507 cagggccggcccatagcccgtcgaggctgggcgacgacaccggacctccaattttttggg 7351448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 9411948 - 9412008
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  9411948 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 9412008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 13832674 - 13832733
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  13832674 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 13832733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 31924481 - 31924540
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||    
T  31924481 cagggccggcccatagcccgtcgaggctgggcgacgacaccggacctctaattttttggg 31924540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 42434738 - 42434679
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  42434738 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 42434679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 699
Target Start/End: Complemental strand, 37350709 - 37350652
Alignment:
Q  642 gggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  37350709 gggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 37350652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 29824190 - 29824249
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||| |||||||| || |||||||||||||  |||||||||||||||    
T  29824190 cagggccggcccatagctcgtcgaggctgggcgacgacaccgggcctccaattttttggg 29824249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 40535443 - 40535502
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  ||| |||||||||||    
T  40535443 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggg 40535502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 9412029 - 9412078
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  9412029 atatgtaagatacgaaaataatgg-ttatatatctattaaaagcaaattat 9412078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 640
Target Start/End: Original strand, 31571764 - 31571837
Alignment:
Q  567 tattgatttattttttaaattaagttgtgagccattcgattgatttgatctaatggttgagatatggtttaagc 640  Q
    ||||| ||| ||||| ||||||| ||||||||||||  ||||||| |||||||||||||| || |||| |||||    
T  31571764 tattggtttgtttttgaaattaaattgtgagccattatattgattggatctaatggttgaaatttggtgtaagc 31571837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 40535575 - 40535623
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  40535575 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 40535623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 7351424 - 7351377
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  7351424 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 7351377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 757
Target Start/End: Original strand, 31924559 - 31924605
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaat 757  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  31924559 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaat 31924605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 29824275 - 29824323
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||| |||||    
T  29824275 atatgtaagccacgaaaataat-ggttatatatctattaaaagcgaatta 29824323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 42434659 - 42434611
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||| ||||||||||||||| ||| |||||||    
T  42434659 atatgtaagccacgaaaataat-ggttatatatctattaaaaacaaatta 42434611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 637 - 699
Target Start/End: Complemental strand, 29601338 - 29601276
Alignment:
Q  637 aagcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  29601338 aagcagggccggcccatagcccgtcgaggctgggcgacgacaccgggtctccaattttttggg 29601276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 10582096 - 10582155
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  10582096 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 10582155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 14122453 - 14122394
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || | |||||||||||| |||||||||||||||    
T  14122453 cagggccggcccatagcccgtcgaggctgggtgacgacaccggacctccaattttttggg 14122394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 26426979 - 26426920
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  26426979 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 26426920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 34501292 - 34501233
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  34501292 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 34501233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 10953787 - 10953727
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||| |||||||||||||||| || |||||||||||||  |||||||||||||||    
T  10953787 gcagggccggtccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 10953727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 10961792 - 10961732
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||| |||||||||||||||| || |||||||||||||  |||||||||||||||    
T  10961792 gcagggccggtccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 10961732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 14123414 - 14123355
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || ||||||||||| |  |||||||||||||||    
T  14123414 cagggccggcccatagcccgtcgaggctgggcgacgacaccaggcctccaattttttggg 14123355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 21405922 - 21405863
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || ||||| |||||||  |||||||||||||||    
T  21405922 cagggccggcccatagcccgtcgaggctgggcgacaacaccgggcctccaattttttggg 21405863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 21800414 - 21800355
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || ||||| |||||||  |||||||||||||||    
T  21800414 cagggccggcccatagcccgtcgaggctgggcgacaacaccgggcctccaattttttggg 21800355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 33817709 - 33817650
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  ||| |||||||||||    
T  33817709 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggg 33817650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 4078854 - 4078902
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  4078854 atatgtaagacacgaaaataat-ggttatatatctattaaaagcaaatta 4078902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 695
Target Start/End: Complemental strand, 10334786 - 10334730
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttt 695  Q
    |||||||||||||||||||| |||||| || |||||||||||||  |||||||||||    
T  10334786 gcagggccggcccatagcccttcgaggctgggcgacgacaccgggcctccaattttt 10334730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 37233484 - 37233543
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||| |||||||||||||||| || |||||||||| ||  |||||||||||||||    
T  37233484 cagggccggtccatagcccgtcgaggctgggcgacgacactgggcctccaattttttggg 37233543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 10582187 - 10582235
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  10582187 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 10582235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 10953702 - 10953654
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  10953702 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 10953654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 10961707 - 10961659
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  10961707 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 10961659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 33817630 - 33817582
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  33817630 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 33817582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 34501212 - 34501164
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  34501212 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 34501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 37233568 - 37233616
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  37233568 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 37233616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 21405843 - 21405796
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  21405843 atatgtaagacatgaaaataatgg-ttatatatctattaaaagcaaatt 21405796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 21800335 - 21800288
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  21800335 atatgtaagacatgaaaataatgg-ttatatatctattaaaagcaaatt 21800288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 29601255 - 29601208
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  29601255 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 29601208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 697
Target Start/End: Original strand, 33317598 - 33317657
Alignment:
Q  638 agcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttg 697  Q
    ||||||||||||| ||||||||| |||| || ||||||||||||   |||||||||||||    
T  33317598 agcagggccggcctatagcccgttgaggctgggcgacgacaccgcgcctccaattttttg 33317657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 699
Target Start/End: Original strand, 4078767 - 4078824
Alignment:
Q  642 gggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||| || || |||| |||||  || ||||||||||||    
T  4078767 gggccggcccatagcccgtcgaggctgggcaacgataccgggccttcaattttttggg 4078824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 10334717 - 10334669
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| || ||||||||||| ||||||||||||| |||||||||||    
T  10334717 atatgtaagccatgaaaataatgg-ttatatatctattaaaagcaaatta 10334669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 26426900 - 26426852
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| || ||||||||||| ||||||||||||| |||||||||||    
T  26426900 atatgtaagccatgaaaataatgg-ttatatatctattaaaagcaaatta 26426852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 634 - 699
Target Start/End: Original strand, 21629409 - 21629474
Alignment:
Q  634 tttaagcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  21629409 tttaaacagggccggcccatagcccgtcgaggttgggcgacgacaccgggcctccaattttttggg 21629474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 28714299 - 28714358
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  28714299 cagggccggcccatagcccgtcgaggttgggcgacgacaccgggcctccaattttttggg 28714358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 638 - 699
Target Start/End: Original strand, 26619161 - 26619222
Alignment:
Q  638 agcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  26619161 agcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 26619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 40219220 - 40219160
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  40219220 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 40219160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 46580288 - 46580348
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  46580288 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 46580348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 1121522 - 1121463
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  1121522 cagggccggcccatagcccgtcgaggatgggcgacgacaccgggcctccaattttttggg 1121463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 6890966 - 6891025
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  6890966 cagggtcggcccatagtccgtcgaggttgggcgacgacaccggacctccaattttttggg 6891025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 32129153 - 32129212
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  32129153 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 32129212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 53228178 - 53228119
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||    
T  53228178 cagggccggcccatagtccgtcgaggctgggcgacgacaccggacctccaattttttggg 53228119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 699
Target Start/End: Original strand, 56038081 - 56038138
Alignment:
Q  642 gggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  56038081 gggccggcccatagcccgtcgaggctggacgacgacaccggacctccaattttttggg 56038138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 759
Target Start/End: Original strand, 50435831 - 50435947
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttgggtannnnnnnnatatgtaagacacgaaaataatgggttata 739  Q
    |||||||||||||||||||||||||| || |||||||||||||  ||||||||||||   |         ||||||||| |||||||||||| |||||||    
T  50435831 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttt--ttttttttttatatgtaagccacgaaaataat-ggttata 50435927  T
Q  740 tatctatttaaagcaaatta 759  Q
    |||||||| |||| ||||||    
T  50435928 tatctattaaaagtaaatta 50435947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 43100605 - 43100546
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||| ||||||| || |||||||||||||  |||||||||||||||    
T  43100605 cagggccggcccatagcctgtcgaggctgggcgacgacaccgggcctccaattttttggg 43100546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 48833102 - 48833043
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||| ||||||||| || |||||||||||||  |||||||||||||||    
T  48833102 cagggccggcccataggccgtcgaggctgggcgacgacaccgggcctccaattttttggg 48833043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 43100521 - 43100472
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  43100521 atatgtaagacacgaaaataatgg-ttatatatctattaaaagcaaattat 43100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 576082 - 576023
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||| |||||||||||||||||| || |||||||||||||  ||||| |||||||||    
T  576082 cagggccagcccatagcccgtcgaggctgggcgacgacaccgggcctccagttttttggg 576023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 13229833 - 13229774
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| |  |||||| ||||||  |||||||||||||||    
T  13229833 cagggccggcccatagcccgtcgaggctaggcgacggcaccgggcctccaattttttggg 13229774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 13229753 - 13229705
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  13229753 atatgtaagtcacgaaaataatgg-ttatatatctattaaaagcaaatta 13229705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 21629494 - 21629543
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||| ||||    
T  21629494 atatgtaagacacgaaaataat-tgttatatatctattaaaagcaatttat 21629543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 756
Target Start/End: Original strand, 26619243 - 26619288
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaa 756  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  26619243 atatgtaagacacgaaaataat-ggttatatatctattaaaatcaaa 26619288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 1121443 - 1121395
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| ||||||||| |||| ||||||||||||| |||||||||||    
T  1121443 atatgtaagccacgaaaatgatgg-ttatatatctattaaaagcaaatta 1121395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 1124281 - 1124233
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||| ||||||||||||||| |||| ||||||    
T  1124281 atatgtaagccacgaaaataat-ggttatatatctattaaaagaaaatta 1124233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 48833014 - 48832966
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||| |||||    
T  48833014 atatgtaagccacgaaaataat-ggttatatatctattaaaagcgaatta 48832966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 4486821 - 4486762
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  4486821 cagggccggcccatagcccgtcgaggttgggcgacgacaccgggcctccaattttttggg 4486762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 14206577 - 14206636
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  14206577 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 14206636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 23219617 - 23219558
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||| |||||| || |||||||||||||  |||||||||||||||    
T  23219617 cagggccggcccatagcccttcgaggctgggcgacgacaccgggcctccaattttttggg 23219558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 31715342 - 31715401
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||| |||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  31715342 cagggtcggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 31715401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 23219537 - 23219489
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  23219537 atatgtaagacacgaaaataat-ggttatatatctattaaaagcaaatta 23219489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 755
Target Start/End: Complemental strand, 4486741 - 4486697
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaa 755  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||    
T  4486741 atatgtaagacacgaaaataat-ggttatatatctattaaaagcaa 4486697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 14206657 - 14206705
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  14206657 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 14206705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 40690495 - 40690554
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||    
T  40690495 cagggccggcccatagcccgtcgaggctgggcgacgacaccggacctccaattttttggg 40690554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 638 - 699
Target Start/End: Complemental strand, 52722658 - 52722597
Alignment:
Q  638 agcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||    
T  52722658 agcagggccggcccatagccggtcgaggctgggcgacgacaccgggtctccaattttttggg 52722597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 43171574 - 43171634
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  43171574 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 43171634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 4971172 - 4971113
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  4971172 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 4971113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 10696009 - 10695950
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  10696009 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 10695950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 14242970 - 14242911
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  14242970 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 14242911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 24596240 - 24596299
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  24596240 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 24596299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 45906055 - 45906114
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  45906055 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 45906114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 641 - 699
Target Start/End: Original strand, 52553326 - 52553384
Alignment:
Q  641 agggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||    
T  52553326 agggccggcccatagcccgtcgaggctgggcgacgacatcgggtctccaattttttggg 52553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 50517266 - 50517206
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||   ||||||||||||||    
T  50517266 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcttccaattttttggg 50517206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 8034585 - 8034526
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  ||| |||||||||||    
T  8034585 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggg 8034526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 38572986 - 38572927
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || ||||||||||| |  |||||||||||||||    
T  38572986 cagggccggcccatagcccgtcgaggctgggcgacgacaccaggcctccaattttttggg 38572927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 39625353 - 39625412
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  || ||||||||||||    
T  39625353 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggccttcaattttttggg 39625412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 53175752 - 53175811
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||| |||||||| || |||||||||||||  |||||||||||||||    
T  53175752 cagggccggcccatagctcgtcgaggctgggcgacgacaccgggcctccaattttttggg 53175811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 24596332 - 24596380
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  24596332 atatgtaagacacgaaaataat-ggttatatatctattaaaagcaaatta 24596380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 682
Target Start/End: Complemental strand, 38834658 - 38834614
Alignment:
Q  638 agcagggccggcccatagcccgtcgaggttgtgcgacgacaccgg 682  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  38834658 agcagggccggcccatagcccgtcgaggctgggcgacgacaccgg 38834614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 4971087 - 4971039
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  4971087 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 4971039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 14242886 - 14242838
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  14242886 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 14242838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 38572895 - 38572847
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  38572895 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 38572847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 40690582 - 40690630
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  40690582 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 40690630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 52553403 - 52553451
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  52553403 atatgtaagtcacgaaaataatgg-ttatatatctattaaaagcaaatta 52553451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 52722578 - 52722530
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  52722578 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 52722530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Original strand, 53175828 - 53175876
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  53175828 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 53175876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 754
Target Start/End: Complemental strand, 24657052 - 24657009
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagca 754  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  24657052 atatgtaagacacgaaaataat-ggttatatatctattaaaagca 24657009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 24657132 - 24657072
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||| ||||||||||||| || |||| ||||||||||||   |||||||||||||||    
T  24657132 gcagggccagcccatagcccgttgaagttgggcgacgacaccgtgcctccaattttttggg 24657072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Original strand, 39625432 - 39625479
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  39625432 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 39625479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Original strand, 45906134 - 45906181
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  45906134 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 45906181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 10475820 - 10475879
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||| ||||||||| ||||||| || ||||||||| |||  |||||||||||||||    
T  10475820 cagggccgacccatagccggtcgaggctgggcgacgacatcgggcctccaattttttggg 10475879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 757
Target Start/End: Original strand, 10475906 - 10475952
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaat 757  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  10475906 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaat 10475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 597
Target Start/End: Original strand, 31588224 - 31588358
Alignment:
Q  462 tggtatggctgaacgatggttgctttgatttttcatttagggaattaggttttgctgacggtataattagagaagagaaagaagagaggatcatgtgtgt 561  Q
    ||||||| || |||||||||||||| |||||    |||| ||||||||||||   |||||| | ||| | || ||| || |||||||| ||| ||||||     
T  31588224 tggtatgtctaaacgatggttgcttcgatttgcactttaaggaattaggtttcattgacggcaaaatcaaagtagataaggaagagagaatcgtgtgtgc 31588323  T
Q  562 cgcgttattgatttattttttaaattaagttgtgag 597  Q
    || |||||||||||  |||||||||||| |||||||    
T  31588324 cgtgttattgattt-gtttttaaattaaattgtgag 31588358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 54245178 - 54245119
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||| |||| ||||| ||||||||  ||||||||||||| |||||||| |||||||    
T  54245178 cagggccgtcccaaagcccatcgaggttaggcgacgacaccgggtctccaatgttttggg 54245119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 8034503 - 8034455
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||| |||||    
T  8034503 atatgtaagccacgaaaataat-ggttatatatctattaaaagcgaatta 8034455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 10695929 - 10695881
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||||||||||||||| | ||||||||||||| ||||| |||||    
T  10695929 atatgtaagacacgaaaataat-gattatatatctattaaaagcgaatta 10695881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 755
Target Start/End: Original strand, 26406941 - 26406985
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaa 755  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||    
T  26406941 atatgtaagccacgaaaataat-ggttatatatctattaaaagcaa 26406985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 28439985 - 28439926
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  28439985 cagggccggcccatagtccgtcgaggttgggcgacgacaccggacctccaattttttggg 28439926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 638 - 699
Target Start/End: Complemental strand, 45463755 - 45463694
Alignment:
Q  638 agcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  45463755 agcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 45463694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 5003659 - 5003599
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  5003659 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 5003599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 4391665 - 4391724
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  4391665 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 4391724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 15382011 - 15381952
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  15382011 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 15381952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 34599773 - 34599714
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  34599773 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 34599714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 38033699 - 38033640
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  38033699 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 38033640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 634 - 699
Target Start/End: Complemental strand, 25459683 - 25459618
Alignment:
Q  634 tttaagcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||| |||||||||||||||||||||||||| || ||||||||| |||  |||||||||||||||    
T  25459683 tttaatcagggccggcccatagcccgtcgaggctgggcgacgacatcgggcctccaattttttggg 25459618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 12131580 - 12131520
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||| ||||||    
T  12131580 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattatttggg 12131520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 643 - 699
Target Start/End: Original strand, 16492421 - 16492477
Alignment:
Q  643 ggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  16492421 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 16492477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 38903347 - 38903407
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||| |||||||||||||||||||||| || |||||||||||||| |||||||| ||||||    
T  38903347 gcagtgccggcccatagcccgtcgaggctgggcgacgacaccggacctccaattatttggg 38903407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 38247863 - 38247811
Alignment:
Q  577 ttttttaaattaagttgtgagccattcgattgatttgatctaatggttgagat 629  Q
    ||||||||||||| || |||| ||||||||||||| |||||||||||||||||    
T  38247863 ttttttaaattaaattatgagtcattcgattgattagatctaatggttgagat 38247811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 12131500 - 12131451
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaattat 760  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  12131500 atatgcaagacacgaaaataatgg-ttatatatctattaaaagcaaattat 12131451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 25459601 - 25459553
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  25459601 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 25459553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 34599695 - 34599647
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  34599695 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 34599647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 5003578 - 5003531
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  5003578 atatgtaagacatgaaaataatgg-ttatatatctattaaaagcaaatt 5003531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Original strand, 16492497 - 16492544
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  16492497 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 16492544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 710 - 758
Target Start/End: Complemental strand, 45463671 - 45463624
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatt 758  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  45463671 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatt 45463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 28439907 - 28439859
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||  ||||||||||||| ||||||||||||| |||||||||||    
T  28439907 atatgtaagctacgaaaataatgg-ttatatatctattaaaagcaaatta 28439859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 25764407 - 25764347
Alignment:
Q  639 gcagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  25764407 gcagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 25764347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 3466326 - 3466385
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  3466326 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 3466385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 22527644 - 22527585
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  22527644 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 22527585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 3514514 - 3514455
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||||||||||||| |||||| || |||||||||||||  |||||||||||||||    
T  3514514 cagggccggcccatagcccatcgaggatgggcgacgacaccgggcctccaattttttggg 3514455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 19858318 - 19858259
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| || |||||||||||||  ||| |||||||||||    
T  19858318 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggg 19858259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 641 - 699
Target Start/End: Complemental strand, 21145922 - 21145864
Alignment:
Q  641 agggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||| |||| || |||||||||||||  |||||||||||||||    
T  21145922 agggccggcccatagcccgttgaggctgggcgacgacaccgggcctccaattttttggg 21145864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 794511 - 794570
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||| ||||| |||||||||||||| || |||||||||||||  |||||||||||||||    
T  794511 cagggtcggcctatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggg 794570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 19858239 - 19858191
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  19858239 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 19858191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 25764327 - 25764279
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  25764327 atatgtaagccacgaaaataatgg-ttatatatctattaaaagcaaatta 25764279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 21145845 - 21145797
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||| |||||    
T  21145845 atatgtaagccacgaaaataat-ggttatatatctattaaaagcgaatta 21145797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 699
Target Start/End: Original strand, 30371 - 30430
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    |||||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  30371 cagggccggcccatagcccgtcgaggctggacgacgacaccggacctccaattttttggg 30430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 759
Target Start/End: Complemental strand, 3040 - 2992
Alignment:
Q  710 atatgtaagacacgaaaataatgggttatatatctatttaaagcaaatta 759  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  3040 atatgtaagacacgaaaataat-gattatatatctattaaaagcaaatta 2992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 699
Target Start/End: Complemental strand, 3121 - 3062
Alignment:
Q  640 cagggccggcccatagcccgtcgaggttgtgcgacgacaccggatctccaattttttggg 699  Q
    ||||||||| |||||||||||||||| || |||||||||||||  ||| || ||||||||    
T  3121 cagggccggtccatagcccgtcgaggctgggcgacgacaccgggcctctaaatttttggg 3062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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