View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-2 (Length: 515)
Name: NF0707-INSERTION-2
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 515
Target Start/End: Original strand, 36134571 - 36135078
Alignment:
| Q |
8 |
atcttgccattaattgccaataacatcatgaagatattgtcaaagctgcacattatactgtcataacaacacattatgccacctgatgtaaatatctcta |
107 |
Q |
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| T |
36134571 |
atcttgccattaattgccaataacatcatgaagatattgtcaaagctgcacattatactgtcataacaacacattatgccacctgatgtacatatcttta |
36134670 |
T |
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| Q |
108 |
atttacttgtttatatataagaaaaagactcgatgaaaatcatgacattccatcacaaatcagtatttgttacaatgcacgttcatatatagtttgcaat |
207 |
Q |
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| T |
36134671 |
atttacttgtttatatataagaaaaagactcgatgaaaatcatgacattccatcacaaatcaatatttgttacaatgcatgttcatatatagtttgcaat |
36134770 |
T |
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| Q |
208 |
gttttgttttatacatgcatgatttcagtttaatatattgatggtttgagtgatctgaatattgttagcgatttctaatatcaatgcaaaattttccaat |
307 |
Q |
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| T |
36134771 |
gttttgtgttatacatgcatgattccagttaaatatatcgatcgtttgagtgatctgaatattgttagcgatttctaatatcaatgtaaaattttcaaat |
36134870 |
T |
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| Q |
308 |
ccaatatgtgtatttgtgtactttgtgattgagatgagccactagcaagaatgaagaatgtttgatgatgtaccttgttttgaacaatggaatgtgttaa |
407 |
Q |
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| T |
36134871 |
tcaatatgtgtatttgtgtactttgtgattgagatgagccagtagcaagaatgaagaatgtttgatgatgtagcttgttttgaacaatggaatgtgttaa |
36134970 |
T |
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| Q |
408 |
tccattatatattcacnnnnnnngggctatattgtcaacaatgttctcttgctcgaacatatttctagatgaactgcttagaaataccttactctaatgg |
507 |
Q |
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| T |
36134971 |
tccattatatattcactttttttgggctatattgtcaaaaatgttctcttgctcgaacaaatttctagatgaactgcttagaaataccttactctaatgg |
36135070 |
T |
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| Q |
508 |
gtgtttca |
515 |
Q |
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| T |
36135071 |
gtgtttca |
36135078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 37330105 - 37330030
Alignment:
| Q |
14 |
ccattaattgccaataacatcatgaagatattgtcaaagctgcacattatactgtca-taacaacacattatgcca |
88 |
Q |
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||||||||| |||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
37330105 |
ccattaattttcaataatatcatgaagatattgtcaaagcaatacactatactgtcattaacaacacattatgcca |
37330030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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