View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-5 (Length: 643)
Name: NF0707-INSERTION-5
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 7 - 643
Target Start/End: Original strand, 3209162 - 3209798
Alignment:
| Q |
7 |
agcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctatagccttggcttcctccagggtcaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3209162 |
agcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttcctccggggtcaa |
3209261 |
T |
|
| Q |
107 |
tttcacggcgaatccatctacaatgtttcggtatgagaaaataatacgctgctggttttgagtttttgtagcggtttccggcaagagtgaatggtaccaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209262 |
tttcacggcgaatccatctacaatgtttcggtatgagaaaataatacgctgctggttttgagtttttgtagcggtttccggcaagagtgaatggtaccaa |
3209361 |
T |
|
| Q |
207 |
ccatgcaaactctccttagattgaagtgaaggctttttgacgtgaacaatgtaagtcaataagctactttcatcttctagtccttcatttgtagttgtga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209362 |
ccatgcaaactctccttagattgaagtgaaggctttttgacgtgaacaatgtaagtcaataagctactttcatcttctagtccttcatttgtagttgtga |
3209461 |
T |
|
| Q |
307 |
attcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209462 |
attcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtt |
3209561 |
T |
|
| Q |
407 |
tgggaaagatacatgaaaatctcttgcagttaagtcatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagttagcatagcatctt |
506 |
Q |
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| T |
3209562 |
tgggaaagatacatgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatctt |
3209661 |
T |
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| Q |
507 |
acttgttagaaatttcaagatatataaattaaggtacttgcatggtgatgtccgctagtacgttatttgatccggtttacaatcggtggcgttagacaca |
606 |
Q |
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| T |
3209662 |
acttgttagaaatttcaagatatataaattaaggtacttgcatggtgatgtccgctagtacgttatttgatccggtttacaatcggtggcgttagacaca |
3209761 |
T |
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| Q |
607 |
aatatttatgaacgattgtacatgtatatttctttta |
643 |
Q |
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| T |
3209762 |
aatatttatgaacgattgtacatgtatatttctttta |
3209798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 554
Target Start/End: Original strand, 3203188 - 3203736
Alignment:
| Q |
7 |
agcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctatagccttggcttcctccagggtcaa |
106 |
Q |
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|||||| ||||||||||||||||||||| | || || || | ||| |||| |||||||||||||||||||||| | |||||||||| ||| ||||||| |
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| T |
3203188 |
agcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttcttccggggtcaa |
3203287 |
T |
|
| Q |
107 |
tttcacggcgaatccatctacaatgtttcggtatgagaaaataatacgctgctggttttgagtttttgtagcggtttccggcaagagtgaatggtaccaa |
206 |
Q |
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| T |
3203288 |
tttcacggcaaatccagccacaatgtttctgtatgagaaaataatacgctgctggttttgagtttctgtagtggcttgtggcaagagtgaatggtaccaa |
3203387 |
T |
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| Q |
207 |
ccatgcaaactctccttagattgaagtgaaggctttttgacgtgaacaatgtaagtcaataagctactttcatcttctagtccttcatttgtagttgtga |
306 |
Q |
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| T |
3203388 |
ccatgcaaactctccttagattgaagagaaggcttattgacatgaacaatgtaagtcaataagctactttcatcttctagtccttcatttgtagctgtga |
3203487 |
T |
|
| Q |
307 |
attcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtt |
406 |
Q |
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| T |
3203488 |
attcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtt |
3203587 |
T |
|
| Q |
407 |
tgggaaagatacatgaaaatctcttgcagttaagtcatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagttagcatagcatctt |
506 |
Q |
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| T |
3203588 |
tgggaaagatacatgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatctt |
3203687 |
T |
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| Q |
507 |
acttgttagaaatttcaagatatataaattaaggtac-ttgcatggtga |
554 |
Q |
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| T |
3203688 |
acttgttaaaaatttcaagatatataaattaaggtactttgcatggtga |
3203736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 55 - 406
Target Start/End: Original strand, 3217158 - 3217509
Alignment:
| Q |
55 |
ttgatagaacctcctcattctcttctatagccttggcttcctccagggtcaatttcacggcgaatccatctacaatgtttcggtatgagaaaataatacg |
154 |
Q |
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|||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||| | | |||| ||||||||||||| | || |
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| T |
3217158 |
ttgatagaacctcctccttctcttctagagccttggcttcttctggggtcaatttcacggcgaatccattcatgacgttttggtatgagaaaattacgcg |
3217257 |
T |
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| Q |
155 |
ctgctggttttgagtttttgtagcggtttccggcaagagtgaatggtaccaaccatgcaaactctccttagattgaagtgaaggctttttgacgtgaaca |
254 |
Q |
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| T |
3217258 |
ttgctggttttgagtttttatggtggctgctggcaagagtgaattgtaccagccatccaaactctccttagattgaagagaaggcttttcaacgtgaaca |
3217357 |
T |
|
| Q |
255 |
atgtaagtcaataagctactttcatcttctagtccttcatttgtagttgtgaattcttggtatttatgtgctgaagttgtatagatacttagcacaagaa |
354 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||||| | | || ||||||| |||| |
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| T |
3217358 |
atgtaagtcaacaagctactttgatcttctagtccttcatttgcagctgctaatttttggtatttatttgctgaagtttgacatatgcttagcaggagaa |
3217457 |
T |
|
| Q |
355 |
tgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgtt |
406 |
Q |
| |
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||||||||| |||||| |||||||| |||||||||||| ||| | ||||||| |
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| T |
3217458 |
tgaaaccaagaagcaagattggagtgagttccatcttgtttatgttcatgtt |
3217509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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