View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707-INSERTION-7 (Length: 752)

Name: NF0707-INSERTION-7
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707-INSERTION-7
NF0707-INSERTION-7
[»] chr7 (7 HSPs)
chr7 (8-218)||(38701008-38701218)
chr7 (617-722)||(38701232-38701337)
chr7 (521-619)||(19883466-19883564)
chr7 (518-619)||(6232214-6232316)
chr7 (518-619)||(48888187-48888288)
chr7 (518-619)||(44346486-44346587)
chr7 (281-352)||(48888451-48888522)
[»] chr4 (4 HSPs)
chr4 (512-618)||(55329158-55329264)
chr4 (518-619)||(18848061-18848162)
chr4 (518-618)||(42111004-42111104)
chr4 (521-618)||(55353569-55353666)
[»] chr8 (4 HSPs)
chr8 (520-619)||(42202696-42202795)
chr8 (518-616)||(44684481-44684579)
chr8 (531-609)||(25967835-25967913)
chr8 (560-609)||(3578036-3578085)
[»] chr6 (1 HSPs)
chr6 (518-619)||(380660-380762)
[»] chr3 (1 HSPs)
chr3 (518-619)||(51361279-51361380)
[»] chr5 (4 HSPs)
chr5 (522-619)||(2756301-2756398)
chr5 (518-619)||(3678231-3678331)
chr5 (518-612)||(3761010-3761104)
chr5 (519-619)||(42628995-42629095)
[»] scaffold0691 (1 HSPs)
scaffold0691 (518-618)||(1186-1286)
[»] chr1 (2 HSPs)
chr1 (273-351)||(46971771-46971849)
chr1 (553-612)||(13155021-13155080)
[»] chr2 (2 HSPs)
chr2 (551-619)||(38971055-38971123)
chr2 (569-612)||(16080465-16080508)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 38701008 - 38701218
Alignment:
Q  8 atacaaagatattttcatgcaacttacttccccgacaataaatttacaacccaacaaggcaacaactacccaaaaaactaaaccttcactagaccaaata 107  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38701008 atacaaaaatattttcatgcaactcacttccccgacaataaatttacaacccaataaggcaacaactacccaaaaaactaaaccttcactagaccaaata 38701107  T
Q  108 ttacttggggtaccttctcgctccaccaataagctctaatccctttcttcctcataacatcactatggccctaaatggaagggtaaagtttcttctttaa 207  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38701108 ttacttgggataccttctcgctccaccaataaactctaatccctttcttcctcataacatcactatggtcctaaatggaagggtaaagtttcttctttaa 38701207  T
Q  208 catcttttccc 218  Q
    |||||||||||    
T  38701208 catcttttccc 38701218  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 617 - 722
Target Start/End: Original strand, 38701232 - 38701337
Alignment:
Q  617 ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagccaagactacaaccaaactacttttcatacaaag 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38701232 ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagctaagactacaaccaaactacttttcatacaaag 38701331  T
Q  717 tcctaa 722  Q
    ||||||    
T  38701332 tcctaa 38701337  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 521 - 619
Target Start/End: Original strand, 19883466 - 19883564
Alignment:
Q  521 agtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 619  Q
    |||||| ||||||||||||||| ||||  |||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19883466 agtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtcta 19883564  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 518 - 619
Target Start/End: Complemental strand, 6232316 - 6232214
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcct-atctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagt 616  Q
    ||||||||| |||||||||||||||||||| | | |||||| |||||| || ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  6232316 aaaagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagt 6232217  T
Q  617 cta 619  Q
    |||    
T  6232216 cta 6232214  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 619
Target Start/End: Complemental strand, 48888288 - 48888187
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    ||||||||| |||||||||| |||| |||| || ||||||  |  || || |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  48888288 aaaagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtc 48888189  T
Q  618 ta 619  Q
    ||    
T  48888188 ta 48888187  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 619
Target Start/End: Complemental strand, 44346587 - 44346486
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    |||||||||| |||||||| ||||| |||| |||| | ||  | ||| || ||||||||||| ||||||| |||| ||||||| |||||||| |||||||    
T  44346587 aaaagtccctaacacctctgaaacttccccacctaacgcaaaaggcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtc 44346488  T
Q  618 ta 619  Q
    ||    
T  44346487 ta 44346486  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 48888522 - 48888451
Alignment:
Q  281 ttatattattaacaccgaaatatacgagaagtacaaatacacggtgacggcaacaacgccaaaacagaaaaa 352  Q
    |||||||||||||||| || ||||| ||| |||||| |||| || |||||| | ||||||||||||||||||    
T  48888522 ttatattattaacaccaaattatacaagaggtacaattacaaggcgacggctaaaacgccaaaacagaaaaa 48888451  T

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Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 512 - 618
Target Start/End: Complemental strand, 55329264 - 55329158
Alignment:
Q  512 acaggaaaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactct 611  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||| |||||| || ||| |||||||||||||||||||||||||||| |||| |||||    
T  55329264 acaggaaaaagtcacggacacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactct 55329165  T
Q  612 taagtct 618  Q
    |||||||    
T  55329164 taagtct 55329158  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 518 - 619
Target Start/End: Complemental strand, 18848162 - 18848061
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    ||||||||| ||||||||||||||| ||||  |||||||| || ||| || |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  18848162 aaaagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtc 18848063  T
Q  618 ta 619  Q
    ||    
T  18848062 ta 18848061  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 518 - 618
Target Start/End: Original strand, 42111004 - 42111104
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    ||||||||| ||||||||||||||| |||| ||| ||  || ||||| || ||||||||||||||||||||  || |||||||  |||||||||||||||    
T  42111004 aaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaagtc 42111103  T
Q  618 t 618  Q
    |    
T  42111104 t 42111104  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 618
Target Start/End: Complemental strand, 55353666 - 55353569
Alignment:
Q  521 agtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtct 618  Q
    |||||||| ||||||| ||||| |||| |||||| ||  | ||| |  ||||||||||| ||||| |||||| ||||||| |||||||| ||||||||    
T  55353666 agtccctgccacctctgaaactaccccacctatcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtct 55353569  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 520 - 619
Target Start/End: Complemental strand, 42202795 - 42202696
Alignment:
Q  520 aagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 619  Q
    ||||||| ||||||||||||||||||||  |||||||| |||||| ||  | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42202795 aagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 42202696  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 518 - 616
Target Start/End: Complemental strand, 44684579 - 44684481
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagt 616  Q
    ||||||||| ||||||||||||||| |||| ||| ||  || ||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  44684579 aaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaagt 44684481  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 609
Target Start/End: Original strand, 25967835 - 25967913
Alignment:
Q  531 acctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggact 609  Q
    |||||||||||||||||  |||||| |  || ||||| ||||||||||| | |||||||||| ||||||| ||||||||    
T  25967835 acctctaaaactgcccccgctatcttaacaaacactctttggggttccagctccactcgtaaaagaggcaaggaggact 25967913  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 609
Target Start/End: Original strand, 3578036 - 3578085
Alignment:
Q  560 aagcactcattggggttccaacaccactcgtaatagaggcacggaggact 609  Q
    |||||| | |||||||||||||||||||||||| |||||||  |||||||    
T  3578036 aagcacgctttggggttccaacaccactcgtaaaagaggcaaagaggact 3578085  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 518 - 619
Target Start/End: Original strand, 380660 - 380762
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcct-atctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagt 616  Q
    ||||||||| |||||||||||||||||||| | | |||||| |||||| || ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  380660 aaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagt 380759  T
Q  617 cta 619  Q
    |||    
T  380760 cta 380762  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 518 - 619
Target Start/End: Complemental strand, 51361380 - 51361279
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    ||||||||||||||||||||||||| ||||  |||||||| || ||| || |||||||||||||||||||| ||||||||||| |||| ||| || ||||    
T  51361380 aaaagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtc 51361281  T
Q  618 ta 619  Q
    ||    
T  51361280 ta 51361279  T

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Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 619
Target Start/End: Original strand, 2756301 - 2756398
Alignment:
Q  522 gtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 619  Q
    ||||| ||| ||||||||||| ||||  |||||||||||| || |  |||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  2756301 gtcccggacgcctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtcta 2756398  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 619
Target Start/End: Original strand, 3678231 - 3678331
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    ||||||||  |||||||||||||||||||  ||||||| | |||||| ||  |||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  3678231 aaaagtccaggacacctctaaaactgccca-cctatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaagtc 3678329  T
Q  618 ta 619  Q
    ||    
T  3678330 ta 3678331  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 612
Target Start/End: Original strand, 3761010 - 3761104
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactctt 612  Q
    |||||||||  |||||||||||||| ||||  |||| ||||||| || || ||||||||| |||| ||||||||||||||||| |||| ||||||    
T  3761010 aaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactctt 3761104  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 519 - 619
Target Start/End: Original strand, 42628995 - 42629095
Alignment:
Q  519 aaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtct 618  Q
    |||||||| ||| ||||||||||| ||||  ||||||||| |  || || |||||||||| ||||||||| ||||||||||| |||||||| || |||||    
T  42628995 aaagtcccggacgcctctaaaactaccccaactatctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtct 42629094  T
Q  619 a 619  Q
    |    
T  42629095 a 42629095  T

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Target: scaffold0691 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 518 - 618
Target Start/End: Complemental strand, 1286 - 1186
Alignment:
Q  518 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 617  Q
    ||||||||| ||||||||||||||| |||| ||| ||  || ||||| || ||||| |||||||||||||| ||| ||||||| ||||||||||||||||    
T  1286 aaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaagtc 1187  T
Q  618 t 618  Q
    |    
T  1186 t 1186  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 46971849 - 46971771
Alignment:
Q  273 gaaactgcttatattattaacaccgaaatatacgagaagtacaaatacacggtgacggcaacaacgccaaaacagaaaa 351  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||  ||| |||| | ||||||| |||||||||    
T  46971849 gaaacagcttatattattaacaccgaaatatacaagaagtacaaatacaaagtgtcggccataacgccagaacagaaaa 46971771  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 612
Target Start/End: Complemental strand, 13155080 - 13155021
Alignment:
Q  553 tctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactctt 612  Q
    ||||||||| || || || |||||| |||||||||||||||||||||| | |||||||||    
T  13155080 tctcagtaaacattctttagggttcaaacaccactcgtaatagaggcaagtaggactctt 13155021  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 551 - 619
Target Start/End: Complemental strand, 38971123 - 38971055
Alignment:
Q  551 tatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 619  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtcta 38971055  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 612
Target Start/End: Complemental strand, 16080508 - 16080465
Alignment:
Q  569 ttggggttccaacaccactcgtaatagaggcacggaggactctt 612  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||    
T  16080508 ttggggttccaacaccactcataaaagaggcaaggaggactctt 16080465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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