View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-8 (Length: 759)
Name: NF0707-INSERTION-8
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-8 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Complemental strand, 38042676 - 38042173
Alignment:
| Q |
8 |
catcacaccaccgaaccagaacctcaactcgccgacattgccaccgcctttgcctccaaccgcttctttttcatctctctcgactgttccaactccatag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||| |
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| T |
38042676 |
catcacaccaccgaaccagaacctcaactcgccgacattgccaccgcctttgcctccaaccgcttctttttctcctctcccggccgttccaactccatag |
38042577 |
T |
|
| Q |
108 |
ttgaatcgaccccatcctcattctcctcttcctcatcattgttggtttccactgtgccagcaccggcaaatgattctaacaaaaagaagacagttttcaa |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042576 |
ttgaatcaaccccatcctcattctcctcttcctcatcattgttggtttccactgtgccagcaccggcaaatgattctaacaaaaagaagacagttttcaa |
38042477 |
T |
|
| Q |
208 |
cggaagtgtggcggtgccaacatattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatgaaggac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042476 |
cggaagtgtggcggtgccaacatattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatgaaggac |
38042377 |
T |
|
| Q |
308 |
gtgaagtccaattgggaaaccttacacgagcttcttcttagctatctcgctattaatcccaacaacactcacaagtttattctcgatgctttttctgatc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042376 |
gtgaagtccaattgggaaaccttacacgagcttcttcttagctatctcgctattaatcccaacaacactcacaagtttattctcgatgctttttctgatc |
38042277 |
T |
|
| Q |
408 |
ttattgttactcttatgtcctt---nnnnnnnnnnnnnnnnnaatgagaaggtgcatgtgcatgtgtaatttaaaaatatgtaagcttcgtgatagataa |
504 |
Q |
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| T |
38042276 |
ttattgttactctcatgtccttttcttcttcttcttcttcttaatgagaaggtgcatgtgcatgtgtaatttaaaaatatgcaaggttcgtgatagataa |
38042177 |
T |
|
| Q |
505 |
ttag |
508 |
Q |
| |
|
|||| |
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|
| T |
38042176 |
ttag |
38042173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 500 - 759
Target Start/End: Complemental strand, 38042024 - 38041763
Alignment:
| Q |
500 |
gataattagtatgactaattaaattataaattaatgtcttttattaaacacatgttgatagatgcttatgtatctcactcatatttatagttttgaagaa |
599 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042024 |
gataatcagtatgattaattaaattataaattaatgtcttttattaaacacatgttgatagatgcttatgtatctcactcatatttatagttttgaagaa |
38041925 |
T |
|
| Q |
600 |
attaaagtacaatactaggaatagatttatttatttttggtatgatcatcgatgttgcgttattgtgttttaagttgatgtgctgtttcttagaattcac |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38041924 |
attaaagtacaatactaggaatagatttatttatttttggtatgatcatcgatgttgcattattgtcttttaagttgatgtgctgtttcttagaattcac |
38041825 |
T |
|
| Q |
700 |
gttaattaagttgtattaattcaacaag--tatattaatatgaaatgacatgtttaatattg |
759 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
38041824 |
gttaattaagttgtattaattcaactagtatatattaatatgaaatgacatgtttaatattg |
38041763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 31980765 - 31980863
Alignment:
| Q |
203 |
ttcaacggaagtgtggcggtgccaacatattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatg |
301 |
Q |
| |
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||||| ||||||||||| || ||||| || || || || ||||| ||||||||| |||| || ||||||||||||||||| |||| ||| ||||||||| |
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| T |
31980765 |
ttcaatggaagtgtggcagtaccaacctactcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccggagttgatg |
31980863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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