View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707-INSERTION-9 (Length: 727)
Name: NF0707-INSERTION-9
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707-INSERTION-9 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 30 - 724
Target Start/End: Complemental strand, 32183213 - 32182500
Alignment:
| Q |
30 |
gtttaggtctgaaaaggtaccttcacttgaatctgcaagtatttaacatagtcaatgatatcatccagtatgtaagcttgactaccctgcaaattaaaat |
129 |
Q |
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| T |
32183213 |
gtttaggtctgaaaaggtaccttcacttgaatctgcaagtatttaacatagtcaatgatatcatccaatatgtaagcttgactaccctgcaaattaaaat |
32183114 |
T |
|
| Q |
130 |
tcaacgtatatgagctacttaaatttggtcccaaaaaattagctacttaaataacttattcaatacacctttgaaaactaatgttaaatcataaacaaca |
229 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32183113 |
tcaacatatatgagctacttaaatttggtcccaaaaaattagctacttaaataacttattcaatacacctttgaaaactaatcttaaatcataaacaaca |
32183014 |
T |
|
| Q |
230 |
gattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagcgatacgttgcctgcgttgctatattcaaagagtacagggtaagaaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32183013 |
gattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagcaatacgttgcctgcgttgctatattcaaagagtacacggtaagaaa |
32182914 |
T |
|
| Q |
330 |
gaaacaaaattgtgttgatgaattggaataagattattaactagttgacaagagc-----atagttttgaatttaatg--------------atatatct |
410 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| |||||||| |
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| T |
32182913 |
gaaacaaaattgtgttgatgaattggaataagattgttaactagttgacaagagcatagcatagtattgaacttaatgatatcatatgtggtatatatct |
32182814 |
T |
|
| Q |
411 |
gcattttgaatgtggccgttatgattttatcagagatggaaaacgttttacttacacggtcactgtaacgtgttttctcacttttctgttttgtggagct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182813 |
gcattttgaatgtggccgttatgattttatcagagatagaaaaccttttacttacacggtcactgtaacgtgttttctcacttttctgttttgtggagct |
32182714 |
T |
|
| Q |
511 |
gcctcctgattttggatttggaagtaaagaaggtgcagcaactacttccatatgatcaaattgtgaaccatattgcttatctccaacagaatcaggtgtc |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182713 |
gcctcctgattttggatttggaagtaaagaaggtgcagcaactactcccatatgatcaaattgtgaaccatattgcttatctccaacagaatcaggtgtc |
32182614 |
T |
|
| Q |
611 |
catgttgcacgaccctattacaaagttattacaataacactataagttatgtttagattgacttatttgaacttgcatagtgacataacacatatgcaaa |
710 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182613 |
catgttgcatgaccctattacaaaattattacaataacactataagttatgtttagattgacttatttgaacttgcatagtgacataacacatatgcaaa |
32182514 |
T |
|
| Q |
711 |
cgtgaagctatttg |
724 |
Q |
| |
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|||||||||||||| |
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| T |
32182513 |
cgtgaagctatttg |
32182500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 522
Target Start/End: Complemental strand, 51397539 - 51397488
Alignment:
| Q |
471 |
cactgtaacgtgttttctcacttttctgttttgtggagctgcctcctgattt |
522 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
51397539 |
cactgtaacgtgttttctcacttttctattttgtggtactgcctcctgattt |
51397488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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