View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_high_1 (Length: 486)
Name: NF0707_1D_high_1
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 25 - 469
Target Start/End: Complemental strand, 3209167 - 3208723
Alignment:
| Q |
25 |
caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209167 |
caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc |
3209068 |
T |
|
| Q |
125 |
acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209067 |
acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt |
3208968 |
T |
|
| Q |
225 |
ggagcaaggacctttgtaaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgcta |
324 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3208967 |
ggagcaaggacctttgtaaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggccgctggaaggcccgtgcaaggtgcta |
3208868 |
T |
|
| Q |
325 |
atgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208867 |
atgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttc |
3208768 |
T |
|
| Q |
425 |
aatattagctggaatggatgctgcagttgatgatgatgttgatgt |
469 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208767 |
aatattagctggaatggatgctgcagttgatgatgatgttgatgt |
3208723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 25 - 469
Target Start/End: Complemental strand, 3203193 - 3202749
Alignment:
| Q |
25 |
caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc |
124 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
3203193 |
caagcttcttggggttgcaacagaatcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctc |
3203094 |
T |
|
| Q |
125 |
acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt |
224 |
Q |
| |
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||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203093 |
acatccttccttttccgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt |
3202994 |
T |
|
| Q |
225 |
ggagcaaggacctttgtaaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgcta |
324 |
Q |
| |
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|||||||||| | | |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
3202993 |
ggagcaaggaacatcgtaaattcatcccttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtgaaaggtgcta |
3202894 |
T |
|
| Q |
325 |
atgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttc |
424 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| |
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| T |
3202893 |
atgtctttggtaatgccaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgt |
3202794 |
T |
|
| Q |
425 |
aatattagctggaatggatgctgcagttgatgatgatgttgatgt |
469 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||| |
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| T |
3202793 |
catattagctggaatggatgttgctgttgatgatggtgttgatgt |
3202749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 25 - 469
Target Start/End: Complemental strand, 3217115 - 3216662
Alignment:
| Q |
25 |
caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc |
124 |
Q |
| |
|
|||||||||||||||| ||||| | ||||| || ||| ||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||| |
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|
| T |
3217115 |
caagcttcttggggttgcaacagagtcaaggattatggataaattccaatctcggtaaagggatcataattggaatcctggacacaggaatatccctctc |
3217016 |
T |
|
| Q |
125 |
acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt |
224 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
3217015 |
ccatccttccttttctgacgagggaatgccctctccacctgcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaacaagaagctcatt |
3216916 |
T |
|
| Q |
225 |
ggagcaaggacctttgt---------aaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgc |
315 |
Q |
| |
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|||||||||| ||| || ||||| ||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| || | |
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| T |
3216915 |
ggagcaaggaacttcgtcacagacacaaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtac |
3216816 |
T |
|
| Q |
316 |
aaggtgctaatgtctttggtaatgctaatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtac |
415 |
Q |
| |
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| || || |||||||| || || ||||| ||||| |||| |||||||||||| |||||||||||||||| ||||||||||||| || | |||||| | |
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| T |
3216815 |
agggggccaatgtcttcggcaacgctaaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcc |
3216716 |
T |
|
| Q |
416 |
tgaaagttcaatattagctggaatggatgctgcagttgatgatgatgttgatgt |
469 |
Q |
| |
|
||| ||| ||| |||||| |||||||||||||||||||| || | ||||||||| |
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| T |
3216715 |
tgagagtgcaacattagcaggaatggatgctgcagttgaagacggtgttgatgt |
3216662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 3232142 - 3232106
Alignment:
| Q |
157 |
caccacctgcaaaatggaatggccattgtgaattcac |
193 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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| T |
3232142 |
caccacctgcaaaatggaaaggccattgtgaattcac |
3232106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
| Q |
159 |
ccacctgcaaaatggaatggccattgtgaattca |
192 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
3177901 |
ccacctgcaaaatggaaaggccattgtgaattca |
3177934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
| Q |
159 |
ccacctgcaaaatggaatggccattgtgaattca |
192 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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| T |
3240939 |
ccacctgcaaaatggaaaggccattgtgaattca |
3240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 3221909 - 3221873
Alignment:
| Q |
157 |
caccacctgcaaaatggaatggccattgtgaattcac |
193 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3221909 |
caccacctgcaaaatggaaaggccattgcgaattcac |
3221873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 3226891 - 3226855
Alignment:
| Q |
157 |
caccacctgcaaaatggaatggccattgtgaattcac |
193 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3226891 |
caccacctgcaaaatggaaaggtcattgtgaattcac |
3226855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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