View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0707_1D_high_15 (Length: 223)
Name: NF0707_1D_high_15
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 38874003 - 38873795
Alignment:
| Q |
8 |
gagatgaacaagaaactcaactggcattagtggtacttaactcagattcaaaatataaggagagaattaatgtggttggtagttcgatcatcggcggttc |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38874003 |
gagaagaacaagaaactcaactggcattagtggtacttaactcagattcaaaaaataaggaga--attaatgtggttggtagttcgatcatcggcggttc |
38873906 |
T |
|
| Q |
108 |
aaccaagagaacccgccttttatattcccatcaaattcctcttgtgtattgtatggagaaaatattgttggtacgtgagaattgattgacagtctgttct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || |
|
|
| T |
38873905 |
aaccaagagaacccgccttttatattcccatcaaattcctcttgtgtattgtatggagaaaatattgttggtatgtgagaattga-tgacggtctgtcct |
38873807 |
T |
|
| Q |
208 |
atcacatattta |
219 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
38873806 |
attacatattta |
38873795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 38776774 - 38776945
Alignment:
| Q |
13 |
gaacaagaaactcaactggcattagtggtacttaactcagattcaaaatataaggagagaattaatgtggttggt---agttcgatcatcggcggttcaa |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
38776774 |
gaacaggaaactcaactggcattagtggtacttaagtcagattcaaaaaataaggaga--attaacgtggttggtggtagttcgatcataggcggttcaa |
38776871 |
T |
|
| Q |
110 |
ccaagagaacccgccttttatattcccatcaaattcctcttgtgtattgtatggagaaaatattgttggtacgtgagaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
38776872 |
ccaagagaacccgccttttatattcccattaaattcctcttg-----tgtaccgagaaaatattgttggtatgtgagaa |
38776945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1665 times since January 2019
Visitors: 4426