View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_high_2 (Length: 454)
Name: NF0707_1D_high_2
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 164 - 432
Target Start/End: Original strand, 44693695 - 44693967
Alignment:
| Q |
164 |
agcaacagctattgaccacaataaggtgaagtttggagatacaagagtgaacataacacttcaactgtagtgtttgaatactc----gttctctgatggg |
259 |
Q |
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| T |
44693695 |
agcaacagctattgaccacaataaggtgaagtttggagatacaagagtgaacataacacttcaactgtagtgtttgaatactcacttgttctctgatggg |
44693794 |
T |
|
| Q |
260 |
ttaggtttgtgagtttagtagtgtaaccctgcttcagtatgttatatggttttgtacctcacgtttttgcacaaaagaaaaatgcttgctaaataaataa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
44693795 |
ttaggtttgtgagtttagtagtgtaaccctgcttcagtatgttatatggttttgtacctcacatttttgcacaaaagaaaaatgcttgctaagcaaataa |
44693894 |
T |
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| Q |
360 |
aaatatcgagaggagagtacacaattttgtccctcagaatctgaaggtttgcttgcatttcagggttcttttt |
432 |
Q |
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| T |
44693895 |
aaatatcgagaggagagtacacaattttgtccctcagaatctgaaggtttgcttgcatttcagggttcttttt |
44693967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 44693176 - 44693324
Alignment:
| Q |
18 |
tcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagt |
117 |
Q |
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| T |
44693176 |
tcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagt |
44693275 |
T |
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| Q |
118 |
cttctgctgtgttcattccacatggacctagtgctgttcgtgatgtagc |
166 |
Q |
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| T |
44693276 |
cttctgctgtgttcattccacatggacctggtgctgttcgtgatgtagc |
44693324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 44625496 - 44625638
Alignment:
| Q |
24 |
aatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
123 |
Q |
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| T |
44625496 |
aatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
44625595 |
T |
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| Q |
124 |
ctgtgttcattccacatggacctagtgctgttcgtgatgtagc |
166 |
Q |
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| T |
44625596 |
ctgtgttcattccacatggacctggtgctgttcgtgatgtagc |
44625638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 44654651 - 44654793
Alignment:
| Q |
24 |
aatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
123 |
Q |
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| T |
44654651 |
aatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
44654750 |
T |
|
| Q |
124 |
ctgtgttcattccacatggacctagtgctgttcgtgatgtagc |
166 |
Q |
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| T |
44654751 |
ctgtgttcattccacatggacctggtgctgttcgtgatgtagc |
44654793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 44632785 - 44632924
Alignment:
| Q |
24 |
aatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
123 |
Q |
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| T |
44632785 |
aatgtaccagggacaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactttgaaagaaattggggctgcctccaagtcttctg |
44632884 |
T |
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| Q |
124 |
ctgtgttcattccacatggacctagtgctgttcgtgatgt |
163 |
Q |
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| T |
44632885 |
ctgtgttcattccacatggacctggcgctgttcgcgatgt |
44632924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 44683450 - 44683592
Alignment:
| Q |
24 |
aatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
123 |
Q |
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| T |
44683450 |
aatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggggctgcctccaagtcttctg |
44683549 |
T |
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| Q |
124 |
ctgtgttcattccacatggacctagtgctgttcgtgatgtagc |
166 |
Q |
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| T |
44683550 |
ctgtgttcattccacacggacctggcgctgttcgtgatgtagc |
44683592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 44636057 - 44635916
Alignment:
| Q |
24 |
aatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctg |
123 |
Q |
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|||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44636057 |
aatgtaccagggacaagtgctaaagatgtcatggatttggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaaatcttctg |
44635958 |
T |
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| Q |
124 |
ctgtgttcattccacatggacctagtgctgttcgtgatgtag |
165 |
Q |
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| T |
44635957 |
ctgtgttcattccacacggacctggtgctgttcgcgatgtag |
44635916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 44633877 - 44633928
Alignment:
| Q |
380 |
acaattttgtccctcagaatctgaaggtttgcttgcatttcagggttcttttt |
432 |
Q |
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||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| |
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| T |
44633877 |
acaattttgtccctc-gaatatgaaggtttgcttgcattccagtgttcttttt |
44633928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 44693604 - 44693636
Alignment:
| Q |
400 |
ctgaaggtttgcttgcatttcagggttcttttt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
44693604 |
ctgaaggtttgcttgcatttcagggttcttttt |
44693636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 3205175 - 3205311
Alignment:
| Q |
18 |
tcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagt |
117 |
Q |
| |
|
||||||||||| || || ||| ||| |||||||||||||| ||||| | || ||||||||||| ||||| ||||| ||||||||||| |||| || | |
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| T |
3205175 |
tcagagaatgttcccggaacaactgctaaagatgtcatggacatggtgttggtgactcaatacttcgacaccatgaaggaaattggtgcatcctcaaaat |
3205274 |
T |
|
| Q |
118 |
cttctgctgtgttcattccacatggacctagtgctgt |
154 |
Q |
| |
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| || ||||||||||||||||||| ||| ||||||| |
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| T |
3205275 |
cgtcatctgtgttcattccacatggtcctggtgctgt |
3205311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 5555805 - 5555838
Alignment:
| Q |
209 |
agtgaacataacacttcaactgtagtgtttgaat |
242 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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|
| T |
5555805 |
agtgaacataacacttcaactgttgtgtttgaat |
5555838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 5013552 - 5013623
Alignment:
| Q |
176 |
tgaccacaataaggtgaagtttggagatacaagagtgaacataacacttcaactg-tagtgtttgaatactc |
246 |
Q |
| |
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|||||| |||||| || | |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5013552 |
tgaccagaataagatggaatttggagacacaagagtgaacataacacttcaactgttagtgtttgaatactc |
5013623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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