View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_high_4 (Length: 362)
Name: NF0707_1D_high_4
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 9965625 - 9965297
Alignment:
| Q |
1 |
attcagcagccaaccaaattcattacaattcttaatactaaagcatat----cacaaaaattctcaaactaaatcaggctctgatatcccatgttcaaag |
96 |
Q |
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| T |
9965625 |
attcagcagccaaccaaattcattacaattcttaatactaaagcatatatatcacaaaaattctcaaactaaatcaggctctgatatcccatgt-caaag |
9965527 |
T |
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| Q |
97 |
taaatatgaatttcatgcttgttgcaattggcattgagacacttatctatgatgtcttggtttaacaactcaacatacaccccctcaccagaatcagcac |
196 |
Q |
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| T |
9965526 |
taaatatgaatttcatccttgttgcaattggcactgagacacttatctatgatgtcttggtttaacaactcaacgaactccccctcatcaggat---cac |
9965430 |
T |
|
| Q |
197 |
cccaccatattctctcaatgctgaaatatttttggcatttcccaagtgttctttcaagtatagacttgttaagataatcaatgt--atattctcccaaac |
294 |
Q |
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| T |
9965429 |
accaccatatactctcaatgctgaaatatttttggcatttctcaagtgttgtttcaagtatagagttgttaagataatcaatgtgaatattctcccaaac |
9965330 |
T |
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| Q |
295 |
accaaactcacctttgaaatactccaatatatt |
327 |
Q |
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| T |
9965329 |
acaaaactcacctttgaaatactccaatatatt |
9965297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9959536 - 9959381
Alignment:
| Q |
1 |
attcagcagccaaccaaattcattacaattcttaatactaaagcatatcacaaaaattctcaaactaaatcaggctctgatatcccatgttcaaagtaaa |
100 |
Q |
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||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| |
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| T |
9959536 |
attcagcagccaattaaatttattacaattcttaacactaaagcatatcacaaaaattctcaagctaaattgggcactgatatcccatgttcaaagtaaa |
9959437 |
T |
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| Q |
101 |
tatgaatttcatgcttgttgcaattggcattgagacacttatctatgatgtcttgg |
156 |
Q |
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| T |
9959436 |
tatgaatttcatgcttgttgcaacttgcaatgagacacttatctatgatctcttgg |
9959381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 9959384 - 9959332
Alignment:
| Q |
228 |
ttggcatttcccaagtgttctttcaagtatagacttgttaagataatcaatgt |
280 |
Q |
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|||||||||||||||||| ||||| |||||||||||| ||||||| |||||| |
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| T |
9959384 |
ttggcatttcccaagtgtagtttcatgtatagacttgtcaagataaccaatgt |
9959332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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