View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_high_5 (Length: 334)
Name: NF0707_1D_high_5
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 31204826 - 31205115
Alignment:
| Q |
23 |
atacctaatgcctaaaatcatgctcacttggttatttacgttactattaccttttgtctttcgttactattaaataaaggctagtaacaaatatataagc |
122 |
Q |
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| T |
31204826 |
atacctaatgcctaaaatcatgctcagttggttatttacgttactattaccttttgtctttcattactattaaataaaggctagtaacaaatatataagc |
31204925 |
T |
|
| Q |
123 |
----catttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattccttttcatcttttatttattctcatat |
218 |
Q |
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| T |
31204926 |
aagccatttcattgtactactttgatattgagaaataattcaatttaatcattggaaacctaattggttatttcttttcatcttttatttattctcatat |
31205025 |
T |
|
| Q |
219 |
ggttttagagacagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagtcc |
308 |
Q |
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| T |
31205026 |
ggttttagagacagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagtcc |
31205115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 322
Target Start/End: Complemental strand, 18436431 - 18436225
Alignment:
| Q |
113 |
atatataagccatttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattcctttt-catcttttatttatt |
211 |
Q |
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| T |
18436431 |
atatatatgccttttcattatactgagttgacattgagaaataattcaatt-----attggaaacctaattggttatccctttttcatcttttacttatt |
18436337 |
T |
|
| Q |
212 |
ctcatatggttttagaga-cagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagtccct |
310 |
Q |
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| T |
18436336 |
ctcatatggtatcatagagccgtaagatccatggcacctcgcaacaatgcttcaacatctaatgagcagggtgctccagcaattgatccatcaagtcctt |
18436237 |
T |
|
| Q |
311 |
atgatgtccatc |
322 |
Q |
| |
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|| ||||||||| |
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| T |
18436236 |
attatgtccatc |
18436225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 18431836 - 18431736
Alignment:
| Q |
113 |
atatataagccatttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattcc-ttttcatcttttatttatt |
211 |
Q |
| |
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||||||| ||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
18431836 |
atatatatgccttttcattatactgagttgacattgagaaataattcaatt-----attggaaacctaattggttatccctttttcatcttttacttatt |
18431742 |
T |
|
| Q |
212 |
ctcata |
217 |
Q |
| |
|
|||||| |
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| T |
18431741 |
ctcata |
18431736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 30151677 - 30151775
Alignment:
| Q |
160 |
aattcaatcattggaaacctaattggttattcc-ttttcatcttttatttattctcatatggttttagaga-cagtgagatccatggctccttgcaaca |
256 |
Q |
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|||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| | | ||| | |||||||||||||| ||| |||||| |
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| T |
30151677 |
aattcaattattggaaacctaattggttatccctttttcatcttttacttattctcatatggtatcatagagccgtgagatccatggcacctcgcaaca |
30151775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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