View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_high_6 (Length: 330)
Name: NF0707_1D_high_6
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_high_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 116 - 330
Target Start/End: Complemental strand, 9966057 - 9965843
Alignment:
| Q |
116 |
ataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgatttctccatctccac |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966057 |
ataatgatctatatcctcatgcaaagtatgaatgtatctaagcacatcatacttcttccattggttgtcacctaggatcctatgatttctccatctccac |
9965958 |
T |
|
| Q |
216 |
acccaccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatctttcattgtttaaacgatattcactattatgaata |
315 |
Q |
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| T |
9965957 |
acccaccacaaagcagacaaaaagacttgaggaggttgagattgaagaccttccttgatccaatctttcattgtttaaacgatattcactattatgagta |
9965858 |
T |
|
| Q |
316 |
atgcaaatttagaat |
330 |
Q |
| |
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|||||||||| |||| |
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| T |
9965857 |
atgcaaatttcgaat |
9965843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 9966110 - 9966065
Alignment:
| Q |
22 |
aacttccatcaacattcaaattcacaagacctggttgtggaggttc |
67 |
Q |
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| T |
9966110 |
aacttccatcaacattcaatttcacaagacctggttatggaggttc |
9966065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 1556810 - 1557071
Alignment:
| Q |
21 |
caacttccatcaacattcaaattcacaagacctggttgtggaggttcacatcacacctcatttataatctttgcatttgttcctttgccaagcaaataat |
120 |
Q |
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| T |
1556810 |
caacttccatccacattcaatttcacaagacctggttgtggaggttcccatctcacctcttttctaatatttgcatatgttccttttccaaggagataat |
1556909 |
T |
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| Q |
121 |
gatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgatttctccatctccacaccca |
220 |
Q |
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| T |
1556910 |
gatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctaggatcctatgatttctccatctccacaccca |
1557009 |
T |
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| Q |
221 |
ccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatctt |
282 |
Q |
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| T |
1557010 |
ccacaaagcagatagaaaggcttgaggaggttgagattgaagaccttcctttatccaatctt |
1557071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 41286606 - 41286858
Alignment:
| Q |
31 |
caacattcaaattcacaa-gacctggttgtggaggttcacatcacacctcatttataatctttgcatttgttcctttgccaagcaaataatgatctatat |
129 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
41286606 |
caacattcaatttcacaaagacctggttgtggaggttcccatcatacctcatttctaatatttgcatttgttccttttccaagcagataatgatatatat |
41286705 |
T |
|
| Q |
130 |
cctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgatttctccatctccacacccaccacaagga |
229 |
Q |
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| ||||||||||||||||| |||||||||||||| || |||||| | |||||| ||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
41286706 |
catcatgcaaagtatgaatgtatctaagcacgtcataattcttccactggttgccacctaggatcctatga-ttcttcatctccacacccaccacaaggc |
41286804 |
T |
|
| Q |
230 |
agacaaaaagactagagaaggttgagattgaagaccttccttaatccaatcttt |
283 |
Q |
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||||| ||||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
41286805 |
agacataaagactttaggaagttgagattgaagaccttccttaatccaatcttt |
41286858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 50544904 - 50544946
Alignment:
| Q |
21 |
caacttccatcaacattcaaattcacaagacctggttgtggag |
63 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50544904 |
caacttccatcaacattcaatttcacaagacctggttgtggag |
50544946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 48478541 - 48478299
Alignment:
| Q |
21 |
caacttccatcaacattcaaattcacaagacctggttgtggaggttcacatcacacctcatttataatctttgcatttgttcctttgccaagcaaataat |
120 |
Q |
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||||||||||| |||||||| ||||||||||||||||||| |||||| |||| |||||| ||| |||||||||||| ||||||||| || || | ||||| |
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| T |
48478541 |
caacttccatccacattcaatttcacaagacctggttgtgaaggttcccatcgcacctcttttctaatctttgcatatgttcctttccccaggagataat |
48478442 |
T |
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| Q |
121 |
gatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgatttctccatctccacaccca |
220 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478441 |
gatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctaggatcctatgatttctccatctccacaccca |
48478342 |
T |
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| Q |
221 |
ccacaaggaagacaaaaagactagagaaggttgagattgaaga |
263 |
Q |
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|| ||| | ||| | |||| || ||| |||||||||||||||| |
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| T |
48478341 |
ccccaaagcagatagaaaggcttgaggaggttgagattgaaga |
48478299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 90 - 283
Target Start/End: Original strand, 36343582 - 36343777
Alignment:
| Q |
90 |
tttgcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcaccta |
189 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||| || | |||||| || ||||||||| |||| |||||||||| |
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| T |
36343582 |
tttgcatttgttcctttgccaagcagataatgatttatatcctcacgcaacgtatgaatgtaccaaagcacatcatacttcttc-attgattgtcaccta |
36343680 |
T |
|
| Q |
190 |
ggatcctatgatttctccatctccacac---ccaccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaatcttt |
283 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| | ||| ||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
36343681 |
ggatcctatgatttctccaactccacacccaccaccacaaggcatacagaaagacttgaggaggttgagattgaagaccctccttaatccaatcttt |
36343777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 11347766 - 11348024
Alignment:
| Q |
21 |
caacttccatcaacattcaaattcacaagacctggttgtggaggttcacatcacacctcatttataatctttgcatttgttcctttgccaagcaaataat |
120 |
Q |
| |
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|||||||||||||||||| | |||||||||||| ||||||||||| |||| |||||| ||| ||||||| ||||||||||||| |||||| || || |
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| T |
11347766 |
caacttccatcaacattcgatttcacaagaccttgttgtggaggtggccatcgcacctcctttctaatcttattatttgttcctttgtcaagcagatgat |
11347865 |
T |
|
| Q |
121 |
gatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgatttctccatctccacaccca |
220 |
Q |
| |
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||||||||| || |||||| |||||||| |||||||| | | ||||||||| ||||||||||||||||||| |||||| || ||||||||| ||||| |
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| T |
11347866 |
gatctatattctaatgcaatgtatgaatgtatctaagtatattatacttcttccattggttgtcacctaggattctatgaatttgccatctccataccca |
11347965 |
T |
|
| Q |
221 |
ccacaaggaagacaaaaagactagagaaggttgagattgaagaccttccttaatccaat |
279 |
Q |
| |
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|| ||| | || | |||||| ||| || ||||||||||||||||||||||||||||| |
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|
| T |
11347966 |
ccgcaaagtggatagtaagacttgaggagattgagattgaagaccttccttaatccaat |
11348024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 10414714 - 10414677
Alignment:
| Q |
21 |
caacttccatcaacattcaaattcacaagacctggttg |
58 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
10414714 |
caacttccatcaacattcaatttcacaagacatggttg |
10414677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 33979081 - 33978989
Alignment:
| Q |
109 |
caagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgat |
201 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||| ||||||||||| || || |||||| |||| |||||| |||||||||||||| |
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| T |
33979081 |
caagcagataatgatctatatcctcatgaaaagtatgaatgtatctaagcacatcatatttcttccattgaatgtcacttaggatcctatgat |
33978989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 33979152 - 33979094
Alignment:
| Q |
21 |
caacttccatcaacattcaaattcacaagacctggttgtggaggttcacatcacacctc |
79 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||||| |||| |||||| |
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|
| T |
33979152 |
caacttccatcaacattcaattttacaagacctagttgtggaggttgtcatcgcacctc |
33979094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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