View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_1D_high_8 (Length: 289)

Name: NF0707_1D_high_8
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_1D_high_8
NF0707_1D_high_8
[»] chr2 (1 HSPs)
chr2 (23-269)||(13643706-13643953)
[»] scaffold0055 (8 HSPs)
scaffold0055 (121-250)||(4605-4733)
scaffold0055 (121-250)||(41700-41828)
scaffold0055 (121-250)||(50948-51076)
scaffold0055 (121-250)||(66571-66699)
scaffold0055 (121-250)||(69403-69531)
scaffold0055 (121-250)||(71557-71685)
scaffold0055 (121-250)||(79949-80077)
scaffold0055 (121-250)||(32386-32514)
[»] scaffold0052 (7 HSPs)
scaffold0052 (121-250)||(6303-6431)
scaffold0052 (121-250)||(25473-25601)
scaffold0052 (121-250)||(27335-27463)
scaffold0052 (121-250)||(35229-35357)
scaffold0052 (121-250)||(47855-47983)
scaffold0052 (121-250)||(79802-79930)
scaffold0052 (121-250)||(63551-63679)
[»] scaffold0021 (1 HSPs)
scaffold0021 (121-250)||(46117-46245)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 13643953 - 13643706
Alignment:
Q  23 aaacgcagcttcaattgattctacgatgtggtttcagcaattaaatacgattttggtttggcccagatcctggtttcagaactatgatagtgttattggc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13643953 aaacgcagcttcaattgattctacgatgtggtttcagcaattaaataccattttggtttggcccagatcctggtttcagaactatgatagtgttattggc 13643854  T
Q  123 aaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccagggaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||   || ||    
T  13643853 aaggctgaaacatagaggaattgacggaagggcacctccatgagtggagcctacggcgtaatttgactcaacacagggaaacttatcaagtc---ggcac 13643757  T
Q  223 agtaaggattgacaaactgagagc----tcttgattctattagtggtggtg 269  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  13643756 agtaaggattgacaaactgagagctctttcttgattctattagtggtggtg 13643706  T

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Target: scaffold0055 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 4605 - 4733
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  4605 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 4703  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  4704 atagtaaggattgacagactgagagctctt 4733  T

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Target: scaffold0055; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 41828 - 41700
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  41828 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 41730  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  41729 atagtaaggattgacagactgagagctctt 41700  T

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Target: scaffold0055; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 51076 - 50948
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  51076 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 50978  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  50977 atagtaaggattgacagactgagagctctt 50948  T

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Target: scaffold0055; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 66699 - 66571
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  66699 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 66601  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  66600 atagtaaggattgacagactgagagctctt 66571  T

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Target: scaffold0055; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 69531 - 69403
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  69531 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 69433  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  69432 atagtaaggattgacagactgagagctctt 69403  T

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Target: scaffold0055; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 71557 - 71685
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  71557 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 71655  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  71656 atagtaaggattgacagactgagagctctt 71685  T

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Target: scaffold0055; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 80077 - 79949
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  80077 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 79979  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  79978 atagtaaggattgacagactgagagctctt 79949  T

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Target: scaffold0055; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 32514 - 32386
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || |||||||||||||| |||||| ||| |||||||| || |||| |||||||| |||||| ||||||||||| || ||||| |      
T  32514 gcaaggctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggcttaatttgactcaacaaggggaaacttaccaggtcca-gac 32416  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| | |||||||||||    
T  32415 atagtaaggattgacagattgagagctctt 32386  T

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Target: scaffold0052 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 6431 - 6303
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  6431 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 6333  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  6332 atagtaaggattgacagactgagagctctt 6303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 25601 - 25473
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  25601 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 25503  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  25502 atagtaaggattgacagactgagagctctt 25473  T

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Target: scaffold0052; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 27463 - 27335
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  27463 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 27365  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  27364 atagtaaggattgacagactgagagctctt 27335  T

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Target: scaffold0052; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 35229 - 35357
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  35229 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 35327  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  35328 atagtaaggattgacagactgagagctctt 35357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 47983 - 47855
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  47983 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 47885  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  47884 atagtaaggattgacagactgagagctctt 47855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 79930 - 79802
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  79930 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 79832  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  79831 atagtaaggattgacagactgagagctctt 79802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 63551 - 63679
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || |||||||||||||| |||||| ||| |||||||| || |||| |||||||| |||||| ||||||||||| || ||||| |      
T  63551 gcaaggctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggcttaatttgactcaacaaggggaaacttaccaggtcca-gac 63649  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| | |||||||||||    
T  63650 atagtaaggattgacagattgagagctctt 63679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 46245 - 46117
Alignment:
Q  121 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 220  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  46245 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 46147  T
Q  221 acagtaaggattgacaaactgagagctctt 250  Q
    | |||||||||||||| |||||||||||||    
T  46146 atagtaaggattgacagactgagagctctt 46117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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