View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_1D_low_1 (Length: 918)

Name: NF0707_1D_low_1
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_1D_low_1
NF0707_1D_low_1
[»] chr4 (27 HSPs)
chr4 (62-630)||(44692758-44693324)
chr4 (241-627)||(44632538-44632924)
chr4 (253-630)||(44654415-44654793)
chr4 (282-630)||(44683243-44683592)
chr4 (628-896)||(44693695-44693967)
chr4 (219-629)||(44635916-44636326)
chr4 (422-630)||(44625430-44625638)
chr4 (75-154)||(44683056-44683134)
chr4 (18-63)||(22800703-22800749)
chr4 (18-64)||(31849437-31849482)
chr4 (18-62)||(37089211-37089256)
chr4 (18-62)||(5635317-5635360)
chr4 (18-61)||(14787274-14787318)
chr4 (18-61)||(14789273-14789317)
chr4 (18-61)||(36921338-36921382)
chr4 (18-61)||(38928024-38928068)
chr4 (844-896)||(44633877-44633928)
chr4 (864-896)||(44693604-44693636)
chr4 (18-61)||(49089000-49089044)
chr4 (18-61)||(8631260-8631302)
chr4 (18-61)||(24348650-24348692)
chr4 (18-64)||(7941772-7941817)
chr4 (18-61)||(40091259-40091304)
chr4 (18-62)||(6765291-6765336)
chr4 (18-62)||(16455670-16455715)
chr4 (20-61)||(36378736-36378777)
chr4 (18-58)||(36919432-36919473)
[»] chr6 (6 HSPs)
chr6 (316-618)||(3205009-3205311)
chr6 (18-61)||(9020354-9020398)
chr6 (18-61)||(13057615-13057659)
chr6 (18-61)||(2628727-2628769)
chr6 (18-61)||(30034447-30034489)
chr6 (673-706)||(5555805-5555838)
[»] chr7 (7 HSPs)
chr7 (640-710)||(5013552-5013623)
chr7 (18-61)||(7094301-7094344)
chr7 (18-61)||(7092054-7092097)
chr7 (27-62)||(43253357-43253392)
chr7 (18-61)||(48458058-48458100)
chr7 (18-61)||(31434892-31434937)
chr7 (18-59)||(38397044-38397084)
[»] chr8 (6 HSPs)
chr8 (18-62)||(27829747-27829791)
chr8 (18-61)||(27827436-27827479)
chr8 (18-61)||(15073158-15073202)
chr8 (18-62)||(15809669-15809712)
chr8 (18-61)||(2467979-2468022)
chr8 (18-61)||(32339761-32339803)
[»] chr3 (13 HSPs)
chr3 (18-61)||(1321854-1321897)
chr3 (19-66)||(4103731-4103778)
chr3 (18-61)||(42990674-42990717)
chr3 (18-62)||(53915337-53915382)
chr3 (18-61)||(36012199-36012243)
chr3 (18-61)||(6232165-6232208)
chr3 (18-61)||(11168477-11168519)
chr3 (18-61)||(41849428-41849470)
chr3 (18-61)||(42992756-42992799)
chr3 (18-61)||(51726847-51726889)
chr3 (18-61)||(1313777-1313822)
chr3 (18-59)||(47701522-47701564)
chr3 (18-59)||(5192026-5192066)
[»] scaffold0025 (1 HSPs)
scaffold0025 (18-62)||(69132-69176)
[»] chr5 (6 HSPs)
chr5 (18-62)||(658203-658247)
chr5 (18-61)||(10587209-10587252)
chr5 (18-62)||(21684293-21684336)
chr5 (18-61)||(36402170-36402214)
chr5 (18-62)||(38882483-38882526)
chr5 (18-61)||(34476894-34476936)
[»] chr1 (13 HSPs)
chr1 (18-68)||(18839978-18840029)
chr1 (18-61)||(6995540-6995584)
chr1 (17-61)||(20302836-20302879)
chr1 (18-61)||(31424862-31424906)
chr1 (18-61)||(39462912-39462956)
chr1 (18-61)||(3579431-3579474)
chr1 (18-61)||(13358969-13359011)
chr1 (18-61)||(13447117-13447159)
chr1 (18-61)||(20291852-20291894)
chr1 (18-64)||(30780438-30780485)
chr1 (18-61)||(4131221-4131266)
chr1 (18-61)||(50078635-50078680)
chr1 (18-62)||(39932470-39932515)
[»] scaffold0068 (1 HSPs)
scaffold0068 (18-62)||(29574-29617)
[»] scaffold0031 (1 HSPs)
scaffold0031 (18-61)||(79587-79631)
[»] scaffold0005 (2 HSPs)
scaffold0005 (18-61)||(50413-50457)
scaffold0005 (18-61)||(52412-52456)
[»] chr2 (4 HSPs)
chr2 (18-61)||(19501843-19501885)
chr2 (18-64)||(17849483-17849531)
chr2 (18-58)||(27105168-27105209)
chr2 (18-63)||(28459036-28459081)


Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 62 - 630
Target Start/End: Original strand, 44692758 - 44693324
Alignment:
Q  62 ggaattaactcttgtttgttttgtttctttgaggtccaatagttggtcatgctatgatatggatcacattatctttcattatatcaactcaactttttat 161  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692758 ggaattaactc--gtttgttttgcttctttgaggtccaatagttggtcatgctatgatatggatcacattatctttcattatatcaactcaactttttat 44692855  T
Q  162 tctatgacttatgtatagatattgaatgaatcataacttctgtgtcaaatacttatttatagtttatcatgtttcattacctagtgctatgtgccaaata 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692856 tctatgacttatgtatagatattgaatgaatcataacttctgtgtcaaatacttatttatagtttatcatgtttcattacctagtgctatgtgccaaata 44692955  T
Q  262 tctcctttgctcttggattaccatattttcatttaccgtttcctgtctatgattagctgcaagaatgaggatcgcagctaatgagaaggctgaagcagag 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692956 tctcctttgctcttggattaccatattttcatttaccgtttcctgtctatgattagctgcaagaatgaggatcgcagctaatgagaaggctgaagcagag 44693055  T
Q  362 aaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatctctctgggatgggtattgctcgtcaacgtcaagccattgtagatggtttga 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693056 aaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatctctctgggatgggtattgctcgtcaacgtcaagccattgtagatggtttga 44693155  T
Q  462 gagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaaga 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693156 gagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaaga 44693255  T
Q  562 aattggtgctgcctccaagtcttctgctgtgttcattccacatggacctagtgctgttcgtgatgtagc 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44693256 aattggtgctgcctccaagtcttctgctgtgttcattccacatggacctggtgctgttcgtgatgtagc 44693324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 241 - 627
Target Start/End: Original strand, 44632538 - 44632924
Alignment:
Q  241 cctagtgctatgtgccaaatatctcctttgctcttggattaccatattttcatttaccgtttcctgtctatgattagctgcaagaatgaggatcgcagct 340  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||||| | ||| | || |||||| | || |||||||||||||||| | ||||||    
T  44632538 cctagtgctatgtgccaaatatctactttgttcttggattgccatattttcttatactggtttctgtctttcatcagctgcaagaatgaggttagcagct 44632637  T
Q  341 aatgagaaggctgaagcagagaaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatctctctgggatgggtattgctcgtcaacgtc 440  Q
    || ||||| || || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  44632638 aaggagaaagcggaggcagagaagatcttgcaaataaagcgagccgagggtgaggctgagtccaaatatctctctgggatgggtattgctcgccaacgtc 44632737  T
Q  441 aagccattgtagatggtttgagagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactca 540  Q
    |||||||||| ||||||||||||||||||||||||||||| || |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44632738 aagccattgtggatggtttgagagacagtgtgattggattctcggttaatgtaccagggacaagtgcaaaagatgtcatggatatggtccttgtcactca 44632837  T
Q  541 atactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctagtgctgttcgtgatgt 627  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  44632838 atactttgacactttgaaagaaattggggctgcctccaagtcttctgctgtgttcattccacatggacctggcgctgttcgcgatgt 44632924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 253 - 630
Target Start/End: Original strand, 44654415 - 44654793
Alignment:
Q  253 tgccaaatatctcctttgctcttggattaccatattttcatttaccgtttcctgtcta-tgattagctgcaagaatgaggatcgcagctaatgagaaggc 351  Q
    |||||||||||||||||  ||    ||| |||||||||| | ||| |||| ||||||  |||| |||||||||||||||| | |||||||| ||||||||    
T  44654415 tgccaaatatctcctttattcccaaattgccatattttcttatactgttttctgtcttgtgatcagctgcaagaatgaggttggcagctaaagagaaggc 44654514  T
Q  352 tgaagcagagaaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatctctctgggatgggtattgctcgtcaacgtcaagccattgta 451  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||     
T  44654515 tgaagcagagaaaatcttgcaaattaagcgagccgagggtgaggctgagtctaaatatctctctgggttgggtattgctcgccagcgtcaagcgattgtg 44654614  T
Q  452 gatggtttgagagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgaca 551  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||    
T  44654615 gatggtttgagagacagtgtgattggattttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgaca 44654714  T
Q  552 ctatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctagtgctgttcgtgatgtagc 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44654715 ctatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctggtgctgttcgtgatgtagc 44654793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 282 - 630
Target Start/End: Original strand, 44683243 - 44683592
Alignment:
Q  282 ccatattttcatttaccgtttcctgtcta-tgattagctgcaagaatgaggatcgcagctaatgagaaggctgaagcagagaaaatcttgcaaataaagc 380  Q
    |||||||||| | ||| |||| ||||||  |||| |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||    
T  44683243 ccatattttcttatactgttttctgtcttgtgatcagctgcaagaatgaggttggcagctaaagagaaggctgaagcagagaaaatcttgcaaattaagc 44683342  T
Q  381 gagccgagggtgaggctgagtctaaatatctctctgggatgggtattgctcgtcaacgtcaagccattgtagatggtttgagagacagtgtgattggatt 480  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  44683343 gagccgagggtgaggctgagtctaaatatctctctgggttgggtattgctcgccagcgtcaagccattgtggatggtttgagagacagtgtgattggatt 44683442  T
Q  481 ttcagagaatgtaccagggccaagtgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaag 580  Q
    |||||  |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44683443 ttcagttaatgtaccagggacgactgcaaaagatgtcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggggctgcctccaag 44683542  T
Q  581 tcttctgctgtgttcattccacatggacctagtgctgttcgtgatgtagc 630  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  44683543 tcttctgctgtgttcattccacacggacctggcgctgttcgtgatgtagc 44683592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 628 - 896
Target Start/End: Original strand, 44693695 - 44693967
Alignment:
Q  628 agcaacagctattgaccacaataaggtgaagtttggagatacaagagtgaacataacacttcaactgtagtgtttgaatactc----gttctctgatggg 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  44693695 agcaacagctattgaccacaataaggtgaagtttggagatacaagagtgaacataacacttcaactgtagtgtttgaatactcacttgttctctgatggg 44693794  T
Q  724 ttaggtttgtgagtttagtagtgtaaccctgcttcagtatgttatatggttttgtacctcacgtttttgcacaaaagaaaaatgcttgctaaataaataa 823  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||    
T  44693795 ttaggtttgtgagtttagtagtgtaaccctgcttcagtatgttatatggttttgtacctcacatttttgcacaaaagaaaaatgcttgctaagcaaataa 44693894  T
Q  824 aaatatcgagaggagagtacacaattttgtccctcagaatctgaaggtttgcttgcatttcagggttcttttt 896  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693895 aaatatcgagaggagagtacacaattttgtccctcagaatctgaaggtttgcttgcatttcagggttcttttt 44693967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 219 - 629
Target Start/End: Complemental strand, 44636326 - 44635916
Alignment:
Q  219 tatagtttatcatgtttcattacctagtgctatgtgccaaatatctcctttgctcttggattaccatattttcatttaccgtttcctgtctatgattagc 318  Q
    |||| |||| ||||||||  |||| |||||| | |||| |||||||  |||| ||||||||| |||||||||| | ||| | || ||||||  ||| |||    
T  44636326 tataatttaccatgtttctctaccgagtgctttatgcctaatatctattttgttcttggattgccatattttcttatactggtttctgtcttcgatcagc 44636227  T
Q  319 tgcaagaatgaggatcgcagctaatgagaaggctgaagcagagaaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatctctctggg 418  Q
    ||||||||||||  | |||||||| || ||||| || |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||  ||||    
T  44636226 tgcaagaatgagagtggcagctaaagaaaaggcagaggcagagaagatcttgcaagtaaagcgagccgagggtgaggctgaatctaaatatctccatggg 44636127  T
Q  419 atgggtattgctcgtcaacgtcaagccattgtagatggtttgagagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatgtca 518  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||    
T  44636126 gtgggtattgctcgtcaacgtcaagccattgtggatggtttgagagacagtgtgattggattttcagttaatgtaccagggacaagtgctaaagatgtca 44636027  T
Q  519 tggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctagtgctgt 618  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  44636026 tggatttggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaaatcttctgctgtgttcattccacacggacctggtgctgt 44635927  T
Q  619 tcgtgatgtag 629  Q
    ||| |||||||    
T  44635926 tcgcgatgtag 44635916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 422 - 630
Target Start/End: Original strand, 44625430 - 44625638
Alignment:
Q  422 ggtattgctcgtcaacgtcaagccattgtagatggtttgagagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatgtcatgg 521  Q
    ||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||  |||||||||||| | | |||||||||||||||||    
T  44625430 ggtattgctcgccagcgtcaagcgattgtggatggtttgagagacagtgtgattggattttcagttaatgtaccagggacgactgcaaaagatgtcatgg 44625529  T
Q  522 atatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctagtgctgttcg 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44625530 atatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctggtgctgttcg 44625629  T
Q  622 tgatgtagc 630  Q
    |||||||||    
T  44625630 tgatgtagc 44625638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 44683056 - 44683134
Alignment:
Q  75 gtttgttttgtttctttgaggtccaatagttggtcatgctatgatatggatcacattatctttcattatatcaactcaac 154  Q
    |||||||||| ||||||| ||||||||||    |||||||||||||||||||| |||||| |||||||||||| ||||||    
T  44683056 gtttgttttgcttctttggggtccaatagacattcatgctatgatatggatcatattatc-ttcattatatcagctcaac 44683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 22800749 - 22800703
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacagg 63  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  22800749 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacagg 22800703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 31849482 - 31849437
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacagga 64  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||    
T  31849482 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacagga 31849437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37089256 - 37089211
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 62  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  37089256 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacag 37089211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 5635360 - 5635317
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  5635360 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 5635317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 14787318 - 14787274
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  14787318 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 14787274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 14789317 - 14789273
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  14789317 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 14789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 36921382 - 36921338
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36921382 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 36921338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 38928068 - 38928024
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  38928068 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 38928024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 844 - 896
Target Start/End: Original strand, 44633877 - 44633928
Alignment:
Q  844 acaattttgtccctcagaatctgaaggtttgcttgcatttcagggttcttttt 896  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| |||||||||    
T  44633877 acaattttgtccctc-gaatatgaaggtttgcttgcattccagtgttcttttt 44633928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 864 - 896
Target Start/End: Original strand, 44693604 - 44693636
Alignment:
Q  864 ctgaaggtttgcttgcatttcagggttcttttt 896  Q
    |||||||||||||||||||||||||||||||||    
T  44693604 ctgaaggtttgcttgcatttcagggttcttttt 44693636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 49089000 - 49089044
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  49089000 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 49089044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 8631302 - 8631260
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  8631302 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 8631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 24348650 - 24348692
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  24348650 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 24348692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 7941772 - 7941817
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacagga 64  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  7941772 acatcaagtt-gttgttggtgtgattttcatcgaattcgcaacagga 7941817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 40091304 - 40091259
Alignment:
Q  18 acatcaagtttgttattggtgtga--ttttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  40091304 acatcaagtttgttattggtgtgaatttttcatcgaattcgcaaca 40091259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 6765291 - 6765336
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 62  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||    
T  6765291 acatcaagtttgttattggtgtgatttttcatcgaattcacaacag 6765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 16455670 - 16455715
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 62  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||    
T  16455670 acatcaagtttgttattggtgtgatttttcatcgaattcacaacag 16455715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 36378736 - 36378777
Alignment:
Q  20 atcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||| | ||||||||||||||||||| ||||||||||||    
T  36378736 atcaagtattttattggtgtgattttcatcgaattcgcaaca 36378777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36919473 - 36919432
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgca 58  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  36919473 acatcaagtttgttattggtgtgatttttcatcgaattcgca 36919432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 316 - 618
Target Start/End: Original strand, 3205009 - 3205311
Alignment:
Q  316 agctgcaagaatgaggatcgcagctaatgagaaggctgaagcagagaaaatcttgcaaataaagcgagccgagggtgaggctgagtctaaatatctctct 415  Q
    |||||||||||||||| | || || || ||||||||||||||||| || || ||||| || |||  ||| || || || |||||||| |||||||| ||     
T  3205009 agctgcaagaatgaggttggctgcgaacgagaaggctgaagcagaaaagatattgcagatcaagaaagctgaaggagaagctgagtccaaatatctgtca 3205108  T
Q  416 gggatgggtattgctcgtcaacgtcaagccattgtagatggtttgagagacagtgtgattggattttcagagaatgtaccagggccaagtgcaaaagatg 515  Q
    ||  | ||||| ||||| ||||||||||| ||||| || ||  |||||||||| ||| ||| ||| ||||||||||| || ||  ||| ||| |||||||    
T  3205109 ggactcggtatagctcgccaacgtcaagcaattgttgacggactgagagacagcgtgcttgcattctcagagaatgttcccggaacaactgctaaagatg 3205208  T
Q  516 tcatggatatggtccttgtcactcaatactttgacactatgaaagaaattggtgctgcctccaagtcttctgctgtgttcattccacatggacctagtgc 615  Q
    ||||||| |||||  | || ||||||||||| ||||| ||||| |||||||||||  |||| || || ||  ||||||||||||||||||| ||| ||||    
T  3205209 tcatggacatggtgttggtgactcaatacttcgacaccatgaaggaaattggtgcatcctcaaaatcgtcatctgtgttcattccacatggtcctggtgc 3205308  T
Q  616 tgt 618  Q
    |||    
T  3205309 tgt 3205311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 9020354 - 9020398
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  9020354 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 9020398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 13057615 - 13057659
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  13057615 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 13057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 2628769 - 2628727
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  2628769 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 2628727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 30034489 - 30034447
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  30034489 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 30034447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 706
Target Start/End: Original strand, 5555805 - 5555838
Alignment:
Q  673 agtgaacataacacttcaactgtagtgtttgaat 706  Q
    ||||||||||||||||||||||| ||||||||||    
T  5555805 agtgaacataacacttcaactgttgtgtttgaat 5555838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 710
Target Start/End: Original strand, 5013552 - 5013623
Alignment:
Q  640 tgaccacaataaggtgaagtttggagatacaagagtgaacataacacttcaactg-tagtgtttgaatactc 710  Q
    |||||| |||||| || | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  5013552 tgaccagaataagatggaatttggagacacaagagtgaacataacacttcaactgttagtgtttgaatactc 5013623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 7094344 - 7094301
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  7094344 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 7094301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 7092097 - 7092054
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  7092097 acatcaagtttgttattggtgtgattttcatcgaatttgcaaca 7092054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 43253392 - 43253357
Alignment:
Q  27 ttgttattggtgtgattttcatagaattcgcaacag 62  Q
    |||||||||||||||||||||| |||||||||||||    
T  43253392 ttgttattggtgtgattttcatcgaattcgcaacag 43253357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 48458058 - 48458100
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  48458058 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 48458100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 31434937 - 31434892
Alignment:
Q  18 acatcaagtttgttattggtgtgattt--tcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  31434937 acatcaagtttgttattggtgtgattttctcatcgaattcgcaaca 31434892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 38397044 - 38397084
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaa 59  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  38397044 acatcaagtt-gttattggtgtgattttcatcgaattcgcaa 38397084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27829747 - 27829791
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  27829747 acatcaagtttgttattggtgtgattttcatcgaattcgcaacag 27829791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27827436 - 27827479
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  27827436 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 27827479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 15073158 - 15073202
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  15073158 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 15073202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 15809669 - 15809712
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  15809669 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 15809712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 2468022 - 2467979
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||    
T  2468022 acatcaagtttattattggtgtgattttcatcgaattcacaaca 2467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 32339761 - 32339803
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  32339761 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 32339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1321854 - 1321897
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  1321854 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 1321897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 4103778 - 4103731
Alignment:
Q  19 catcaagtttgttattggtgtgattttcatagaattcgcaacaggaat 66  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  4103778 catcaagtttgttattggtgtgattttcatcgaattcgcaacatgaat 4103731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 42990674 - 42990717
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  42990674 acatcaagtttgttattggtgtgattttcatcgaattcgcaaca 42990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 53915382 - 53915337
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 62  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  53915382 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacag 53915337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 36012199 - 36012243
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36012199 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 36012243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6232165 - 6232208
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  6232165 acatcaaatttgttattagtgtgattttcatcgaattcgcaaca 6232208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 11168477 - 11168519
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  11168477 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 11168519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41849428 - 41849470
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  41849428 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 41849470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 42992756 - 42992799
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||    
T  42992756 acatcaagtttgttattagtgtgattttcatcgaattcacaaca 42992799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 51726889 - 51726847
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  51726889 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 51726847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1313777 - 1313822
Alignment:
Q  18 acatcaagtttgttattggtgtga--ttttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  1313777 acatcaagtttgttattggtgtgagtttttcatcgaattcgcaaca 1313822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 47701564 - 47701522
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaa 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  47701564 acatcaagtttgttattggtgtgatttttcatcgaattcgcaa 47701522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 5192026 - 5192066
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaa 59  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  5192026 acatcaagtt-gttattggtgtgattttcatcgaattcgcaa 5192066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 69176 - 69132
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||    
T  69176 acatcaagtttgttattggtgtgattttcatcgaattcacaacag 69132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 658247 - 658203
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||    
T  658247 acatcaaatttgttattggtgtgattttcatcgaattcgcaacag 658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 10587209 - 10587252
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||||||||| |||||| |||||    
T  10587209 acatcaagtttgttattggtgtgattttcatcgaattcacaaca 10587252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21684336 - 21684293
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  21684336 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 21684293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 36402214 - 36402170
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36402214 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 36402170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 38882483 - 38882526
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  38882483 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 38882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 34476936 - 34476894
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  34476936 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 34476894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 18839978 - 18840029
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacaggaatta 68  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  18839978 acatcaagtttgttattggtgtgatttttcatcgaattcgcaacaagaatta 18840029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 6995584 - 6995540
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6995584 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 6995540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 20302836 - 20302879
Alignment:
Q  17 gacatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  20302836 gacatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 20302879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 31424906 - 31424862
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  31424906 acatcaagtttgttattggtgtgatttttcattgaattcgcaaca 31424862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 39462912 - 39462956
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  39462912 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 39462956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3579474 - 3579431
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||    
T  3579474 acatcaagtttgttattggtgtgtttttcatcgaattcacaaca 3579431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 13358969 - 13359011
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  13358969 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 13359011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 13447159 - 13447117
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  13447159 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 13447117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 20291852 - 20291894
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  20291852 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 20291894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 30780438 - 30780485
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacagga 64  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  30780438 acatcaagtttgttattggtgtgagttttcatcgaattcacaacagga 30780485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 4131266 - 4131221
Alignment:
Q  18 acatcaagtttgttattggtgtga--ttttcatagaattcgcaaca 61  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  4131266 acatcaagtttgttattggtgtgagtttttcatcgaattcgcaaca 4131221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 50078680 - 50078635
Alignment:
Q  18 acatcaagtttgttattggtgtgattt--tcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  50078680 acatcaagtttgttattggtgtgattttctcatcgaattcgcaaca 50078635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39932470 - 39932515
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaacag 62  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||||    
T  39932470 acatcaagtttgttattggtgtgatttttcatcgaattcacaacag 39932515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 29574 - 29617
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacag 62  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  29574 acatcaagtt-gttattggtgtgattttcatcgaattcgcaacag 29617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 79587 - 79631
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  79587 acatcaagtttgttattggtgtgatttttcattgaattcgcaaca 79631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 50413 - 50457
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  50413 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 50457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 52412 - 52456
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgcaaca 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  52412 acatcaagtttgttattggtgtgatttttcatcgaattcgcaaca 52456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 19501885 - 19501843
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaaca 61  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  19501885 acatcaagtt-gttattggtgtgattttcatcgaattcgcaaca 19501843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 17849483 - 17849531
Alignment:
Q  18 acatcaagtttgttattggtgtga--ttttcatagaattcgcaacagga 64  Q
    ||||||||||||||||||||||||  ||||||| |||||| ||||||||    
T  17849483 acatcaagtttgttattggtgtgattttttcatcgaattcacaacagga 17849531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27105168 - 27105209
Alignment:
Q  18 acatcaagtttgttattggtgtga-ttttcatagaattcgca 58  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  27105168 acatcaagtttgttattggtgtgatttttcatcgaattcgca 27105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 28459081 - 28459036
Alignment:
Q  18 acatcaagtttgttattggtgtgattttcatagaattcgcaacagg 63  Q
    ||||||||| | ||||||||||||||||||| |||||| |||||||    
T  28459081 acatcaagtgttttattggtgtgattttcatcgaattcacaacagg 28459036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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