View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_11 (Length: 332)
Name: NF0707_1D_low_11
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 11570531 - 11570830
Alignment:
| Q |
22 |
aggatgagcatatcaagttcaatgtatttgacgtccaaataccaaatcaaggagaagttagggtgattaagtgtaaagaagtcatggaggatatgattga |
121 |
Q |
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| T |
11570531 |
aggatgagcatatcaagttcaatgtatttgac---caaataccaaatcaaggagaagttagggtgattaagtgtaaagaagtcatggaggatatgattga |
11570627 |
T |
|
| Q |
122 |
ggaactagaagcacgtagtggaagtactgaccacttagaaagagtcgttagggactctagttcgaaagaagacctgaatctagatcaggaaacagaagaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11570628 |
ggaactagaagcacgtagtggaagtactgaccacttagaaagagtcattagggactctagttcgaaagaagacctgaatctagatcaggaaacagaagaa |
11570727 |
T |
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| Q |
222 |
atacttgaacagttaaactccccgcaagagactgatccaatccagcag-ctcttgattaaactgacaatcctgatgagaatacccctgaacttaagaaac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
11570728 |
atacttgaacagttaaactccccgcaagagactgatccaatccagcagcctcttgatcaaactgacaaacctgaagagaatacccctgagcttaagaaac |
11570827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 26660214 - 26659993
Alignment:
| Q |
24 |
gatgagcatatcaagttcaatgtatttgacgtccaaataccaaatcaaggagaagttagggtgattaagtgtaaagaagtcatggaggatatgattgagg |
123 |
Q |
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|||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||| || | |||| ||||||||||||||||||||||||||||| | | |
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| T |
26660214 |
gatgagcatatcgagttcaatgtattcgac---caaataccaaatcaaggggaagtcagagagattgagtgtaaagaagtcatggaggatatgattaacg |
26660118 |
T |
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| Q |
124 |
aactagaagcacgtagtggaagtactgaccacttagaaagagtcgttagggactctagttcgaaagaagacctgaatctagatcaggaaacagaagaaat |
223 |
Q |
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|||| | | |||||||| ||| ||||||||||||||||||||| |||| || || ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
26660117 |
aactggcatcacgtagtcgaaa-actgaccacttagaaagagtcattagagaatccagttcaaaagaagatttgaatctagatcaggaaacagaagaaat |
26660019 |
T |
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| Q |
224 |
acttgaacagttaaactccccgcaag |
249 |
Q |
| |
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|||||| ||||||||| |||| |||| |
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| T |
26660018 |
acttgatcagttaaaccccccccaag |
26659993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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