View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_17 (Length: 287)
Name: NF0707_1D_low_17
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6123021 - 6123256
Alignment:
| Q |
1 |
agggaaataaggttttgcttccactgagatggtagaagactaatgtttggaagtttgccttctatctttagtgacttgagcttggaaagaggaggggata |
100 |
Q |
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| T |
6123021 |
agggaagtaaggttttgtttccaccgagatggtaaaacacaaatgtctggaagtttgccttctatctttagtgacttgagcttggaaagaggagcggagg |
6123120 |
T |
|
| Q |
101 |
aagatgatgatgctatattcagtgtttcttccaatggcttcacagtagattcacacaactgcaattctttaacatttggaaaagtaggcaagtcggccaa |
200 |
Q |
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| T |
6123121 |
aagaggatgatgctatatccagtgtttctttcaatggcttcaccatagattcacacaactgcaattcctcaacatttggaaaagtaggcaagtcagtcaa |
6123220 |
T |
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| Q |
201 |
ctttgggcatttgttgattattagttgagagagacg |
236 |
Q |
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| T |
6123221 |
ctttgggcatttgttgattattagttgagagagacg |
6123256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6116417 - 6116180
Alignment:
| Q |
1 |
agggaaataaggttttgcttccactgagatggtagaagactaatgtttggaagtttgccttctatctttagtgacttgagcttggaaagaggaggggata |
100 |
Q |
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|||||| |||||||||| |||||| ||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6116417 |
agggaagtaaggttttgtttccaccgagatggtaaaacactaatttctggaagtttgccttctatctttagtgacttgagcttggaaagaggagtggagg |
6116318 |
T |
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| Q |
101 |
aagatgatgatgctatattcagtgtttcttccaatggcttcacagtagattcacacaactgcaattctttaacatttggaaaagtaggcaagtcggccaa |
200 |
Q |
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| T |
6116317 |
aagaggatgatgctatatccagcgtttctttcaatggcgtcaccatagattcacacaactgcaattcctcaacatttggaaaagtaggcaagtcagtcaa |
6116218 |
T |
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| Q |
201 |
ctttgggcatttgttgattattagttgagagagacgac |
238 |
Q |
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| T |
6116217 |
ctctgggcatttgttgattattagttgagagagacgac |
6116180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 13752714 - 13752586
Alignment:
| Q |
106 |
gatgatgctatattcagtgtttcttccaatggcttcacagtagattcacacaactgcaattctttaacatttggaaaagtaggcaagtcggccaactttg |
205 |
Q |
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||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
13752714 |
gatgatgctatatccggtgtttctttcaatggcttcaccatagattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttg |
13752615 |
T |
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| Q |
206 |
ggcatttgttgattattagttgagagaga |
234 |
Q |
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| T |
13752614 |
ggcatttgttgattattagttgagagaga |
13752586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 6682733 - 6682865
Alignment:
| Q |
127 |
tcttccaatggcttcacagtagattcacacaactgcaattctttaacatttggaaaagtaggcaagtcggccaactttgggcatttgttgattattagtt |
226 |
Q |
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|||| |||||| |||| |||||||||||||| | ||||| ||||||||||| |||| ||| ||| | ||||||||||||| | ||| |||| || |
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| T |
6682733 |
tctttcaatggtttcagtgtagattcacacaattcaaattccttaacatttgggaaaggaggtaagcaagtcaactttgggcatccatagatcattaatt |
6682832 |
T |
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| Q |
227 |
gagagagacgacagaactgaggcaacaagagat |
259 |
Q |
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| T |
6682833 |
gagagagacaacgaaactgaggcagcgagagat |
6682865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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