View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_1D_low_19 (Length: 281)

Name: NF0707_1D_low_19
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_1D_low_19
NF0707_1D_low_19
[»] chr2 (1 HSPs)
chr2 (96-261)||(13643706-13643872)
[»] chr8 (1 HSPs)
chr8 (1-95)||(9699679-9699773)
[»] scaffold0055 (8 HSPs)
scaffold0055 (113-242)||(4605-4733)
scaffold0055 (113-242)||(41700-41828)
scaffold0055 (113-242)||(50948-51076)
scaffold0055 (113-242)||(66571-66699)
scaffold0055 (113-242)||(69403-69531)
scaffold0055 (113-242)||(71557-71685)
scaffold0055 (113-242)||(79949-80077)
scaffold0055 (113-242)||(32386-32514)
[»] scaffold0052 (7 HSPs)
scaffold0052 (113-242)||(6303-6431)
scaffold0052 (113-242)||(25473-25601)
scaffold0052 (113-242)||(27335-27463)
scaffold0052 (113-242)||(35229-35357)
scaffold0052 (113-242)||(47855-47983)
scaffold0052 (113-242)||(79802-79930)
scaffold0052 (113-242)||(63551-63679)
[»] scaffold0021 (1 HSPs)
scaffold0021 (113-242)||(46117-46245)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 96 - 261
Target Start/End: Complemental strand, 13643872 - 13643706
Alignment:
Q  96 ctatgatagtgttattggcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  13643872 ctatgatagtgttattggcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagcctacggcgtaatttgactcaacacagggaaa 13643773  T
Q  196 cttatcaagtccagggaacagtaaggattgacaaactgagagc----tcttgattctattagtggtggtg 261  Q
    |||||||||||   || ||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  13643772 cttatcaagtc---ggcacagtaaggattgacaaactgagagctctttcttgattctattagtggtggtg 13643706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9699773 - 9699679
Alignment:
Q  1 caccgatcagatcagctacttctaagatgctccacaaaccaaccttggtaaggagttcagattttaattgttccttggcaagaatcacgctgctg 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9699773 caccgatcagatcagctacttctaagatgctccacaaaccaaccttggtaaggagttcagattttaattgttccttggcaagaatcacgctgctg 9699679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 4605 - 4733
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  4605 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 4703  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  4704 atagtaaggattgacagactgagagctctt 4733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 41828 - 41700
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  41828 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 41730  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  41729 atagtaaggattgacagactgagagctctt 41700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 51076 - 50948
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  51076 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 50978  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  50977 atagtaaggattgacagactgagagctctt 50948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 66699 - 66571
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  66699 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 66601  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  66600 atagtaaggattgacagactgagagctctt 66571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 69531 - 69403
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  69531 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 69433  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  69432 atagtaaggattgacagactgagagctctt 69403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 71557 - 71685
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  71557 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 71655  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  71656 atagtaaggattgacagactgagagctctt 71685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 80077 - 79949
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  80077 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 79979  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  79978 atagtaaggattgacagactgagagctctt 79949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 32514 - 32386
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || |||||||||||||| |||||| ||| |||||||| || |||| |||||||| |||||| ||||||||||| || ||||| |      
T  32514 gcaaggctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggcttaatttgactcaacaaggggaaacttaccaggtcca-gac 32416  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| | |||||||||||    
T  32415 atagtaaggattgacagattgagagctctt 32386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 6431 - 6303
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  6431 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 6333  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  6332 atagtaaggattgacagactgagagctctt 6303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 25601 - 25473
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  25601 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 25503  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  25502 atagtaaggattgacagactgagagctctt 25473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 27463 - 27335
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  27463 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 27365  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  27364 atagtaaggattgacagactgagagctctt 27335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 35229 - 35357
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  35229 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 35327  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  35328 atagtaaggattgacagactgagagctctt 35357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 47983 - 47855
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  47983 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 47885  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  47884 atagtaaggattgacagactgagagctctt 47855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 79930 - 79802
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  79930 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 79832  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  79831 atagtaaggattgacagactgagagctctt 79802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 63551 - 63679
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || |||||||||||||| |||||| ||| |||||||| || |||| |||||||| |||||| ||||||||||| || ||||| |      
T  63551 gcaaggctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggcttaatttgactcaacaaggggaaacttaccaggtcca-gac 63649  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| | |||||||||||    
T  63650 atagtaaggattgacagattgagagctctt 63679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 46245 - 46117
Alignment:
Q  113 gcaaggctgaaacatagaggaattgacggaagggcacctccatgagtggagtctacggcgtaatttgattcaacacggggaaacttatcaagtccaggga 212  Q
    ||||||||||||| || ||||||||||||||||||||| ||| |||||||| || |||| |||||||| |||||||||||||||||| || ||||| |      
T  46245 gcaaggctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtcca-gac 46147  T
Q  213 acagtaaggattgacaaactgagagctctt 242  Q
    | |||||||||||||| |||||||||||||    
T  46146 atagtaaggattgacagactgagagctctt 46117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1286 times since January 2019
Visitors: 4413