View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0707_1D_low_20 (Length: 277)
Name: NF0707_1D_low_20
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 21013323 - 21013569
Alignment:
| Q |
1 |
aaccaaacttcccactactatttgcccatagatgaggcaccccttgtaaaaagtcctactatatggaaaagaatgcattgcatacatttgacgaaatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21013323 |
aaccaaacttcccactactatttgcccatagatgaggcaccccttgtaaaaagtcctactatatggaaaagaatgcattgcttacatttgacgaaatcat |
21013422 |
T |
|
| Q |
101 |
aactcgaaactgtatgttgtaggaatatcaaattatattttgattagagggtaatcctacaacatatccctaccctctagggtgggacacttgttcattt |
200 |
Q |
| |
|
||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21013423 |
aactcaacactgtatgttgtaagaatatcaaattatattttgattagagggtaatcctacaacataaccctaccctctagggtgggacacttgttcattt |
21013522 |
T |
|
| Q |
201 |
tgaccgttaaacctataatgagggaaaattagttaatttcatgatgt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21013523 |
tgaccgttaaacctataatgagggaaaattagttaatttcattatgt |
21013569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1504 times since January 2019
Visitors: 4421