View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_23 (Length: 266)
Name: NF0707_1D_low_23
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_23 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 24491863 - 24491696
Alignment:
| Q |
96 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24491764 |
T |
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| Q |
196 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491763 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
24491696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 24495421 - 24495254
Alignment:
| Q |
96 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24495421 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24495322 |
T |
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| Q |
196 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
263 |
Q |
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| T |
24495321 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
24495254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 2810371 - 2810249
Alignment:
| Q |
144 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga |
243 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga |
2810272 |
T |
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| Q |
244 |
tattatttcttgatcacagaata |
266 |
Q |
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||||||||||| ||||||||||| |
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| T |
2810271 |
tattatttcttaatcacagaata |
2810249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 24359176 - 24359009
Alignment:
| Q |
96 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24359077 |
T |
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| Q |
196 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
263 |
Q |
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| T |
24359076 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
24359009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 95 - 266
Target Start/End: Complemental strand, 86922 - 86752
Alignment:
| Q |
95 |
gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa |
194 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
86922 |
gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa |
86824 |
T |
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| Q |
195 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaata |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86823 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaata |
86752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 96 - 266
Target Start/End: Original strand, 18556573 - 18556742
Alignment:
| Q |
96 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
195 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18556573 |
tataaggaataatgatatgtatggaataatgatttt-tgctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat |
18556671 |
T |
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| Q |
196 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaata |
266 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
18556672 |
tgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaata |
18556742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 22684964 - 22684888
Alignment:
| Q |
19 |
aaaactgaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactgtaag |
95 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22684964 |
aaaattgaatcccagtttaccttaaacatgcccaaagagttatatgcatcacagatagcaatttggacaactgtaag |
22684888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 22697087 - 22697011
Alignment:
| Q |
19 |
aaaactgaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactgtaag |
95 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |
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| T |
22697087 |
aaaactgaatcccagtttaccttaaacatgcccaaagagttatatgcatcaaagatagcaacttggacaactgtaag |
22697011 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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